Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01052 ATGGACGTTCACCGAAGACCCATTCCTTCTTCCGGCGAACACCGACAAACCCAGAAGCTGAAGACCACCACCACCACCACCACCGATTCGAAATCGCAATCGCAGGCGCTTCTGCCTCTCTACCTCACCAACGCCCTCTTCTTCGGGGTGTTCTTCTCCGTCGCGTACTTCCTCCTCCACCGCTGGCGCGAGAAGATCCGCACCGCCACTCCCCTCCACGCCGTCAGCCCCGCCGAGACCGCCGCCATAGTCTCCCTCGTCGCCTCCGCCGTCTACCTCCTCGGCTTCTTCGGCGTTGCCTCCCGCGCCTCCCTCGACGAGCTATCCGACGACGAGATCATCCTCAAGGAGGACTCCCGCGCCCTGGGCCCATGCCCCGCGGCGCTGGCGGACTCCTCCTGCCTGCTCCCCAACAAAATTCAAAACCAATTCCCTCTATCACCCAAGGCCATCCACAGCGTGACGAAGGAACCACAAGTGGACAGCCCAGTCCCCATCTCCTCGTTCTCGGATGAGGACGAGGAGATCGTACAAGCCGTAGTGTCGGGCTCCATCCCATCCTACTCACTCGAGTCGCGGCTCGGCGACACACGCCGGGCCACGGCCATCAGGCATGAGGTGGTGCAGAGGCTGACTTCCCGATCCCTGTCAGGTTTACCCCTGGAAGGTTTCAACTACGACTCAATATTGGGGCAGTGCTGTGAGATGCCGATAGGGTTCGTGCAGATCCCCGTGGGAGTAGCGGGACCACTGTTGTTGGACGGGAAGGAGTACACCGTGCCCATGGCCACCACTGAAGGGTGTCTCGTTGCGAGCACCAACAGAGGGTGCAAAGCTATCCACGTCTCCGGTGGGGCCTCCTCGGTGTTGCTCAGAGATGGCATGACCAGAGCACCCGTTGTTCGGTTACCCTCCGCTCAGCGCGCCGCGCAGTTGAAGTTCTTCTTGGAGGATCCTCTCAACTTCGATTCGCTTGCTGTCGTTTTCAATAAGTCAAGCAGATTTGCCAGGTTGCAGAACATTCAGTGTGCTATTGCGGGCAAGAATCTGTACATGAGATTCCGATGCAGCACTGGTGATGCCATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTTCTTGATTTTCTTCAGGATGACTTCCCTGATATGGATGTTATTGGAATCTCTGGCAATTTCTGTTCGGACAAGAAAGCCGCAGCCGTGAATTGGATTGAAGGGCGTGGCAAGTCTGTGGTGTGTGAGGCCATAATTAAGGAGGATGTTGTGAAGAAGGTGTTGAAAACCAGTGTGGAGGCCCTGGTCGAACTTAATATGCTCAAAAACCTTACGGGCTCAGCCATGGCTGGTGCTCTTGGTGGGTTCAATGCTCATGCTAGCAATATTGTGTCTGCTATCTACATTGCCACTGGTCAGGATCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGGTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTTAATTTACTTGGTGTCAAGGGTGCCAATAAAGAATCTCCCGGTGCAAATTCTAGGCTACTGGCCACCATTGTAGCCGGTTCAGTCCTAGCTGGGGAACTATCACTCATGTCTGCAATTGCAGCTGGACAACTTGTTAAGAGCCACATGAAATACAACAGATCTAGCAGGGATATATCTACAATTGTCCAATGA 1764 0.5476 MDVHRRPIPSSGEHRQTQKLKTTTTTTTDSKSQSQALLPLYLTNALFFGVFFSVAYFLLHRWREKIRTATPLHAVSPAETAAIVSLVASAVYLLGFFGVASRASLDELSDDEIILKEDSRALGPCPAALADSSCLLPNKIQNQFPLSPKAIHSVTKEPQVDSPVPISSFSDEDEEIVQAVVSGSIPSYSLESRLGDTRRATAIRHEVVQRLTSRSLSGLPLEGFNYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIHVSGGASSVLLRDGMTRAPVVRLPSAQRAAQLKFFLEDPLNFDSLAVVFNKSSRFARLQNIQCAIAGKNLYMRFRCSTGDAMGMNMVSKGVQNVLDFLQDDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAIIKEDVVKKVLKTSVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDISTIVQ 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01052 587 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 233 254 IPR002202 GO:0004420|GO:0015936
Gma16g01052 587 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 260 280 IPR002202 GO:0004420|GO:0015936
Gma16g01052 587 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 351 369 IPR002202 GO:0004420|GO:0015936
Gma16g01052 587 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 391 416 IPR002202 GO:0004420|GO:0015936
Gma16g01052 587 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 442 468 IPR002202 GO:0004420|GO:0015936
Gma16g01052 587 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 496 517 IPR002202 GO:0004420|GO:0015936
Gma16g01052 587 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 562 575 IPR023076 GO:0004420
Gma16g01052 587 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 587 - -
Gma16g01052 587 MobiDBLite consensus disorder prediction 13 28 - -
Gma16g01052 587 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 170 566 IPR009029 GO:0015936|GO:0016616
Gma16g01052 587 Gene3D - 244 564 IPR023074 GO:0004420
Gma16g01052 587 Gene3D - 169 243 IPR023282 GO:0004420
Gma16g01052 587 MobiDBLite consensus disorder prediction 1 28 - -
Gma16g01052 587 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 353 367 IPR023076 GO:0004420
Gma16g01052 587 CDD HMG-CoA_reductase_classI 174 577 IPR004554 GO:0004420|GO:0005515|GO:0008299
Gma16g01052 587 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 508 515 IPR023076 GO:0004420
Gma16g01052 587 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 173 577 IPR002202 GO:0004420|GO:0015936
Gma16g01052 587 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 587 IPR002202 GO:0004420|GO:0015936
Gma16g01052 587 Pfam Hydroxymethylglutaryl-coenzyme A reductase 201 577 IPR002202 GO:0004420|GO:0015936
Gma16g01052 587 Gene3D - 294 410 IPR009023 -
Gma16g01052 587 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 294 410 IPR009023 -
Gma16g01052 587 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 173 577 IPR004554 GO:0004420|GO:0005515|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01052 Gma-Chr16 26591827 26595835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01052 1 583 Lipid Metabolism Gene Families AT1G76490 67.881 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01052 K00021 - gmx:100815480 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01052 16 26591827 26595835 Gma16g01052 16 26591827 26595835 ECH