Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00542 ATGGACATCCTCTTCGCcCAGATCCAAGCCGACCTCCGCTCCAACGACGCCCTCCGCCAGTCCGGCGCCCTCCTCCAGGCCCTCCAGCAGTCCGCCGCCGGTCGCGACATCGCCGTCATTGCCAAGACTGCCGTCGAGGAAATCGTCGCCGCCCCCGCCTCCGCCGTCTGCAAGAAGCTCGCCTTCGACCTCATCCGCTCCACCCGCCTCACCCCCGACCTCTGGGAGACCGTCTGCGGCGGCATCCGCACCGACCTCCACTTCCCCGACCCCGACGTCGCCGCCGCCGCCGTCTCCATCCTCGCCGCCATCCCCTCCTACCGCCTCGCCAAACTCATCTCCGACTGCAACAAGGAAATCTCCGACTGCTTCGACTCCCCCAGCGACTCCCTCCGCTTCTCCGCCACTGAAACCCTTGGCTGCGTCCTCGCCCGCGACGACCTCGTCACCCTCTGCGAAAACAACGTCAACCTCCTCGACCGCGTCTCCGCCTGGTGGGCCCGCGTGGGGTCCAACATGCTCGACCGCTCCGACGCCGTTTCCAAGGTCGCATTCGAATCCGTCGGCCGCCTCTTCCAGGAATTCAGCTCCAAACGCATGAGCAAGCTCGCCGGCGACAAACTCGTCGATTCCGAAAACTCCCTCGCGATCCGCTCCAACTGGGTCTCTTCCATGGTGGACTTCGTCTGGAGGAAGCGCCGCGCCCTCATGGCGCGCTCCTTGATCCTCCCCGTTGAGAATTTCCGCACCACCGTGTTCCCCGTCGTGTACTCCGTCAAGGCCGTGGCCTCCGGTGGCGTCGAGGTCATTCGAAAACTCTCCAAGGCGGCTTCTTCCTCTGCATCATCCAATGCCGCGGGTGCTGAGGTTGATTCCCACGCGGAGAAGCTTGTTGGGGTTTCGGATGTGGTCACTCACCTGGCGCCGTTCCTTGTTTCGTCGTTGGAGCCAGCGTTGATCTATGAGGTTGGGATCAATATGCTGTATCTGGCTGATGTGCCTGGTGGGAAGCCTGAATGGGCCTCGCAATCGATCATTGCGATTCTGACGTTGTGGGATCGGCTGGACTTTGCTTCTGCTAGGGAGAGCATTGTTAGGGCGGTTGTCACCAATTTGCATCTCCTTGATCTTCACATGCAGGTATCACTGTTCAAGAGGTTACTTTTAATGGTTAAAAACCTGAGAGCAGAATCAGATCGAATGTATGCTCTAGCATGTATATGTAGAACGGCTCTTTGTGTACATCTATTCGCCAAGGAAAGTGTACGAAGAGGGCAGAAACCTCTTCCCGGAACGGATATAGCTTCCCTTTTTGAGGATGCCAGAGTGAATGATGATCTTAATAGCATTACAAGTAAAAGTATATTTAGGGAGGAGCTAGTTGCATCGCTGGTGGAAAGTTGCTTTCAGCTGTCTCTTCCATTGCCTGAACAAAATAACACGGGCATGGAGAGTAGGGTCATTGGAGCTTTGGCATATGGAACTGGTTATGGTGCATTAAACTGGACTGAACCTGCTTTGGAAGTAGTGGAAGTTTGTCGGCCTTGTGTTAAATGGGATTGCGACGGCCGCACCTACGCGGTTGACTGCTACTTGAAGTTGCTTGTTAGGCTATGTTACATATATGATACTCGGGGTGGGGTAAAAAGAGTCAAAGATGGAGCTTCTCAGGACCAAATTTTGAATGAAACTAGATTGCAAAACTTGCAACGTGAACTTGTGAAGGACTTGCATGAGGTTAATACACCAAGAATGTTGGCCCGCCTTATTTGGGCTATTGCAGAGCACATAGATATAGAAGGATTGGATCCACTCCTAGCAGACGACCCAGATGATCCTCTTAATGTCATTATATCAAATATTCACAAGGTTCTTTTCAATGTCGATTCAACTGCAGAAACAACAAATAGAGTTCAAGATGTACAGGCAGTTCTAATATCTGCTCAACGGCTGGGATCACGCCACCCTAGGGCTGGTCAGTTACTTACCAAAGAGCTTGAAGAGTTTAGGAACAATCCTTTGGCTGATTCTGTCAGCAAGCATCAATGTCGTTTGATATTGCAAAGAATCAAATATGCTACAAGTCATCAAGACAATAAGTGGGCAGGGGTAACAGAAGCTAGAGGGGATTACCCATTTAGCCACCACAAATTAACTGTTCAGTTTTATGAAGCATCTGCTGCTCAGGATAGAAAGTTGGAAGGATTGGTTCACAAGGCTATTCTAGAGTTATGGAGACCTGACCCCAGTGAACTAACCCTTTTACTCACAAAAGGAGTTGATTCTACTTTACTGAAGGTTCCTCCAAATGCAATTACTTTGACTGGAAGCAGTGATCCTTGCTATGTTGAAGGTTATCATTTGGCTGATGCAAGTGATGGGAGGATCACTCTGCATTTGAAGGTCTTAAACTTAACTGAGCTTGAATTAAATCGGGTGGATGTACGCGTGGGATTATCAGGTGCATTATATTATATGGATGGCTCTTCTCAAGCTGTGCGGCAATTGCGTGGTCTTGTTTCACAGGATCCAGTGTTGTGCAGTGTGACAGTTGGTGTTTCCCACTTTGAAAGATGTGCCCTTTGGGTTCAAGTATTGTATTACCCATTCTATGGTAGTAGTGCTGTCAGAGACTATGAAGGTGACTATGCCGAGGAGGATCCTCAAATCATGAGACAGAAGAGAAGCCTAAGGCCTGAATTAGGTGAACCTGTGATTTTGAGATGTCAGCCATATAAAATTCCATTGACTGAGCTTCTTTTGCCACACCAAATATCACCTGTTGAGTTTTTCCGACTGTGGCCCAGTTTGCCAGCTATTGTAGAATATACTGGCACATATACATATGAAGGAAGTGGCTTTAAGGCTACTGCAGCCCAGCAGTATGGTGCATCTCCTTTCTTAAGTGGACTGAAATCCTTGTCTTCCAAACCATTCCACAAAGTTTGTTCACATATTATCCGCACAGTGGCAGGGTTTGAGATGTGTTATGCTGCCAAAACTTGGCATGGTGGCTTCTTGGGCATGATGATTTTTGGTGCTAGTGAAGTGAGTAGAAATGTGGACTTAGGTGATGAGACTACAACCATGCTGTGCAAGTTTGTGGTTCGTGCATCCGATTCATCTATTACCAAGGAGATCGGATCAGACCTTCAGGGTTGGTTGGATGACCTTACTGATGGTGGAGCGGAATATATGCCTGAAGATGAAGTGAAGGTAGCTGCAGCCGAGAGGCTTCGCATATCAATGGAAAGGATAGCCTTGTTGAAGGCAGCCCAACCACGACCCAAGACTCCAAAATCTGATGACGAAGATGAAGAGGAGGAATATGACAATAATAAAGAAAAGAAAGATGGTGAAGAAGACGAGAAACCAAAGGGGCCATCAACTCTATCGAAACTAACTGCTGAGGAAGCTGAACATCAAGCTCTTCAAGCAGCAGTACTACAGGAGTGGCATATGATCTGCAAGGATCGAACTACTGAAGTTAATTAA 3495 0.4941 MDILFAQIQADLRSNDALRQSGALLQALQQSAAGRDIAVIAKTAVEEIVAAPASAVCKKLAFDLIRSTRLTPDLWETVCGGIRTDLHFPDPDVAAAAVSILAAIPSYRLAKLISDCNKEISDCFDSPSDSLRFSATETLGCVLARDDLVTLCENNVNLLDRVSAWWARVGSNMLDRSDAVSKVAFESVGRLFQEFSSKRMSKLAGDKLVDSENSLAIRSNWVSSMVDFVWRKRRALMARSLILPVENFRTTVFPVVYSVKAVASGGVEVIRKLSKAASSSASSNAAGAEVDSHAEKLVGVSDVVTHLAPFLVSSLEPALIYEVGINMLYLADVPGGKPEWASQSIIAILTLWDRLDFASARESIVRAVVTNLHLLDLHMQVSLFKRLLLMVKNLRAESDRMYALACICRTALCVHLFAKESVRRGQKPLPGTDIASLFEDARVNDDLNSITSKSIFREELVASLVESCFQLSLPLPEQNNTGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAVDCYLKLLVRLCYIYDTRGGVKRVKDGASQDQILNETRLQNLQRELVKDLHEVNTPRMLARLIWAIAEHIDIEGLDPLLADDPDDPLNVIISNIHKVLFNVDSTAETTNRVQDVQAVLISAQRLGSRHPRAGQLLTKELEEFRNNPLADSVSKHQCRLILQRIKYATSHQDNKWAGVTEARGDYPFSHHKLTVQFYEASAAQDRKLEGLVHKAILELWRPDPSELTLLLTKGVDSTLLKVPPNAITLTGSSDPCYVEGYHLADASDGRITLHLKVLNLTELELNRVDVRVGLSGALYYMDGSSQAVRQLRGLVSQDPVLCSVTVGVSHFERCALWVQVLYYPFYGSSAVRDYEGDYAEEDPQIMRQKRSLRPELGEPVILRCQPYKIPLTELLLPHQISPVEFFRLWPSLPAIVEYTGTYTYEGSGFKATAAQQYGASPFLSGLKSLSSKPFHKVCSHIIRTVAGFEMCYAAKTWHGGFLGMMIFGASEVSRNVDLGDETTTMLCKFVVRASDSSITKEIGSDLQGWLDDLTDGGAEYMPEDEVKVAAAERLRISMERIALLKAAQPRPKTPKSDDEDEEEEYDNNKEKKDGEEDEKPKGPSTLSKLTAEEAEHQALQAAVLQEWHMICKDRTTEVN 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00542 1164 MobiDBLite consensus disorder prediction 1112 1128 - -
Gma16g00542 1164 MobiDBLite consensus disorder prediction 1090 1138 - -
Gma16g00542 1164 Coils Coil 1103 1123 - -
Gma16g00542 1164 SUPERFAMILY ARM repeat 4 648 IPR016024 -
Gma16g00542 1164 Gene3D - 4 231 IPR011989 -
Gma16g00542 1164 PANTHER TSET COMPLEX MEMBER TSTA 1 1161 IPR037501 GO:0006897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00542 Gma-Chr16 5996712 6006168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00542 1 842 EF-hand Containing Proteins AT3G01780 85.036 0.0 1445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00542 - - gmx:100787122 2198.7