Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00536 ATGTCTAAGGCCAAGCTCACTCGTTTCACAAGTGACCCTGTGAGGATTGCTGCTTTCTGCTTCAAGAACCTGAAGAAAACTCAGGTTCTTGATGCTGACATTTCTTCTGCTGTTGacaagattttgcaagaaatggatggtgtatcctatagagtgctgggctatcttcttcttggcactatcagaatattctcccgaaaggttgaatatgtgcttgaggactgcaacgaggttctcctcaaaatcagcaaatttgtcatccacaaagaaggcttaATACCTGTGGAAACCTTGCGTATGCCTATTACCATACCAGAAAGGTTTGAGTTGGATGCTTTTGAGTTGGATGGACTTGAAGATGCTGGCAGAGGCCATACTGCTCCTCCAGAAGAAATTACGCTTGGAGACAAAGaaattgtgtgtagcactgagggatttgggttgttttctcacgagaagTTTGAGGAATTTGATGTCGGTGAAAATACCAGCTCTTTTGATCAAGATATAGTGGGAAATGCTTTACTATCTAAACTGTTGAATATGATGGACGATGAAGTTTCTCCACAAAATAGTCCTACTGATTTACTACCGGAAAGCTGGGATAAATTTCAAAGCAGCATATCAGGCTTTCAAGAAAATGTTTCAGATGAAGATGATGAAAGGCTTAGTGTTATTCCACCTAAGTCAAAAAATGTTGATGCAACTCCTCAGTCAAAGTTTCAAGGATATTCAGCTGGAAGACCACAACGAGCAGATTCTGCTACAAAAGAGTCATTGCATGTTTCCACACCAGCTGCGAGGGATCATCCTCCCTTTTTAAGGAAAAGAAGAATTATTCTTGATAGAATGATTCTCCTGCCTAGCAAGGtagttagaaagaacatagagagtgcaaaggacttgcttcgtttccctttcccgagggaatcacgtcgtactttacttaatgcacgctgtgtgaagaaacacagagaatctcccacttccagtcttcctgatagattctatgagcctttgcttccatgttcttcctctgagcttcaactccaattctctaaaaggaaaatgaaattacctaattccctaaagattgtggaaactccagggaatccagatgtgccagaatctcccactgctggccctctgctaagcccttcccaatcttcattttcccttgaaattgaggaaactccaagaatgttagatgtacctcaatctcaggattctagcattcaaatgaatgaagtgcctaatttgattgatgaggaaataaattcatgtgcaacaaatgaatcagaatcatgtaagaactcttgcaaatcgtcatttaagaaagttgcaagttgcttgcatcagagttttctacatgcaagaaaagaaagagaggacaccataaacttttcacaagtctttggaggccaagcacggaaagaatctgccctgttgttttatgaagtactggttttgaaaacttcaggatacgtggatgtgaagcaacaagaagcttatggtgatattgcaatctgtagactcccgaaattagatcagatttttttatgtgatggtggTCTATTAGAATGA 1584 0.1736 MSKAKLTRFTSDPVRIAAFCFKNLKKTQVLDADISSAVDKILQEMDGVSYRVLGYLLLGTIRIFSRKVEYVLEDCNEVLLKISKFVIHKEGLIPVETLRMPITIPERFELDAFELDGLEDAGRGHTAPPEEITLGDKEIVCSTEGFGLFSHEKFEEFDVGENTSSFDQDIVGNALLSKLLNMMDDEVSPQNSPTDLLPESWDKFQSSISGFQENVSDEDDERLSVIPPKSKNVDATPQSKFQGYSAGRPQRADSATKESLHVSTPAARDHPPFLRKRRIILDRMILLPSKVVRKNIESAKDLLRFPFPRESRRTLLNARCVKKHRESPTSSLPDRFYEPLLPCSSSELQLQFSKRKMKLPNSLKIVETPGNPDVPESPTAGPLLSPSQSSFSLEIEETPRMLDVPQSQDSSIQMNEVPNLIDEEINSCATNESESCKNSCKSSFKKVASCLHQSFLHARKEREDTINFSQVFGGQARKESALLFYEVLVLKTSGYVDVKQQEAYGDIAICRLPKLDQIFLCDGGLLE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00536 527 Pfam N terminus of Rad21 / Rec8 like protein 17 87 IPR006910 GO:0005515
Gma16g00536 527 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 2 16 520 - -
Gma16g00536 527 PANTHER SCC1 / RAD21 FAMILY MEMBER 16 520 IPR039781 GO:0007062|GO:0008278
Gma16g00536 527 MobiDBLite consensus disorder prediction 212 268 - -
Gma16g00536 527 Pfam Conserved region of Rad21 / Rec8 like protein 466 514 IPR006909 -
Gma16g00536 527 Gene3D Structural maintenance of chromosome 1. Chain E 433 520 IPR023093 -
Gma16g00536 527 SUPERFAMILY "Winged helix" DNA-binding domain 447 515 IPR036390 -
Gma16g00536 527 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00536 Gma-Chr16 5932751 5940412 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00536 K06670 - gmx:100775734 996.112