Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00516 ATGACACTCCGTCTAGTGTCAGCTCCGCCGTCGTTCTCTCTCTTCTCCTGCCGCGCCACCGCATCCACCGCCCTCCCTCCGCCGACACCGACGCCGACGCCGGCGCCGACGCTTATTTCTTCAATTCCACAGTCCCCGCCGCTAACATGCGCACTTCACTGTCCGCACTTCCAATCGTGTTCGGGGTGCACGCACGAGTTCAATCTCCACCGTCCGGTGATATTGGACGACGCCACCAATTTCTTTCGGAAACACGGCGTCTCCGACTTCACATTTGACACGTGCAAACTGTGGGGTTGGAGGTGCCGTGCGAAATTGGCCGTGCGTGGCTCTTCGACGGAGCCTCTCATTGGGCTCTATGAGGAGGGTACTCATAACGTAGTTGACATTCCACAATGCCAAGCTCATCATCCTAATATTAATGCTGCTGTGGAGCTGCTTAGACGGGGTATTATTGAAATAGGTGTTGAGCCATATATTGAAGATGAAGGTACTGGTGATTTGCGATATGTCCAGATGGCTGTGACAACATATAACACATCTCTTCCTGCGGCTCAAAGATATAAGAATGGAAAGGTTCAGGTTACATTGGTTTGGAATTCAAGAAATGAAAACTCACCCGGTTCAGACAAACTGAATGCATTAGCAAATTTTCTGTGGAAAAATGGTGGTCAAAGGAGCAGGCTTCATTTAATTCACTCTGTGTGGGCCAACTTTCAGACTTCTACTAACAATATAATTTTTGGGAATAAATGGAGACATCTTCTTGGAGAAAGAGATTTTTGGGAACACGTTGGTGGAATTGATGTATCCTTGGCACCTTCTAGTTTTGGCCAGGCAAACACACGGGCTTTTGATGCCTTGCTTCGGAGGTTACAGAAATATGTTCCATATGAATCAGATGTTGCTGATTTGTATGCTGGAGCTGGGGTCATTGGGTTGTCATTAGCTGCCACAAGAAAATCTATTAAATGCATCGAGATTAACAAAGAGTCAAAGGCATCTTTTGAGAAGACCATTGAACGGTTACCTGCCACCGTTGACAGCAGTATTACTTGGCATCATGCAGATGCTTCAAAAGAGCCCTTTTTGTGGCTTTTGGGTTCAGATGTTGTCGTCATTGATCCTCCCAGGAAAGGACTAGATGCATCTCTTATTGATGCATTGAAGAATATATCATCAGTCGAGCGTAAAGCCTTTTCATCTTCTGGAAGCTCAAACTCATCCCAGGAAGAGAAGAGACCTTGGGTTTTACGTGCTAAAGAAGATTCAGTCCAAATTGGAAGCAAACCTCCAACTAACATAGCTCAATCAGTGCCACAAACCCTTATTTATATAAGTTGCGGATGGGAAAGTTTTAAAGAGGACTGCAAGTCATTGTTGTCTAGTAAGGCATGGTATTTGGAAAAAGCTCATGGTTTTAATTTCTTTCCTGGCACCCAGAGCATTGAAGTTCTAGCAGTGTTCAAGAGGGGCCCTCAGAAAAAGAAACAAGGAAAGAAAAAGAAAAAACACTTGCAAGGAGCTGTGAGACATTAA 1539 0.4535 MTLRLVSAPPSFSLFSCRATASTALPPPTPTPTPAPTLISSIPQSPPLTCALHCPHFQSCSGCTHEFNLHRPVILDDATNFFRKHGVSDFTFDTCKLWGWRCRAKLAVRGSSTEPLIGLYEEGTHNVVDIPQCQAHHPNINAAVELLRRGIIEIGVEPYIEDEGTGDLRYVQMAVTTYNTSLPAAQRYKNGKVQVTLVWNSRNENSPGSDKLNALANFLWKNGGQRSRLHLIHSVWANFQTSTNNIIFGNKWRHLLGERDFWEHVGGIDVSLAPSSFGQANTRAFDALLRRLQKYVPYESDVADLYAGAGVIGLSLAATRKSIKCIEINKESKASFEKTIERLPATVDSSITWHHADASKEPFLWLLGSDVVVIDPPRKGLDASLIDALKNISSVERKAFSSSGSSNSSQEEKRPWVLRAKEDSVQIGSKPPTNIAQSVPQTLIYISCGWESFKEDCKSLLSSKAWYLEKAHGFNFFPGTQSIEVLAVFKRGPQKKKQGKKKKKHLQGAVRH 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00516 512 CDD AdoMet_MTases 301 395 - -
Gma16g00516 512 Pfam Methyltransferase small domain 287 383 IPR007848 GO:0008168
Gma16g00516 512 Gene3D - 101 278 - -
Gma16g00516 512 MobiDBLite consensus disorder prediction 493 512 - -
Gma16g00516 512 Gene3D Vaccinia Virus protein VP39 96 393 IPR029063 -
Gma16g00516 512 Gene3D Vaccinia Virus protein VP39 416 489 IPR029063 -
Gma16g00516 512 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Gma16g00516 512 PANTHER BNAA06G32370D PROTEIN 25 492 - -
Gma16g00516 512 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 52 490 IPR029063 -
Gma16g00516 512 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 58 492 IPR010280 GO:0006396|GO:0008173
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00516 Gma-Chr16 5728690 5734929 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00516 - - gmx:100816889 995.727