Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00508 ATGCCTGAGAAAAGTTCGAGTCTTTGGACCACTATGGTTTGTGGGTACGCTCAGAATTTCTGCTCCAACGAGGCTTTGGATCTGTTTGAGGATATGGTTGGGGAGGGCTTTGAGCCCAGTGGCTCCACCTTGGCGTCGGTGTTGTCCGCATGTGCCCGGTCGGGTTGTCTCGAGCTCGGGGAAAGGATTCATGAGTTTATGATGGTGAAAGGGGTTGGACTTGGAGATGGAGTGATTCTCGGGACCGCGTTGGTTTACTTGTATGCGAAGAATGGGGCGATTGCGATGGCGCGAAGGTTGTTCGATGAAATGTCGGAGAGGAATGTTGTTACTTGGAATGCTATGATTTGTGGGTTGGGTGCTTATGGGTACGTGGATGATGTGCTTGATTTGAGGGAGTGGGTTGTTGTTCCCAATGGTGTCACCTTTGTTGGAGTTTTGTCGGCTTGTTGTCATGCTGGCTTGATTGATGTTGGTTGTGAGATTTTTCGGTCGATGAAGTCGGTGTATGGAATTGAGCTGAAGATTCAGCATTATGGGTGCTTGGTTGATCTTCATGGGCGAGGGGCTAGCACGAATAGTGGGAATACTGAGGTTGCTGAAAGAGTGGTGAAGGAAATTCTTGCTCTGGAACCTCAGAATAATGTTGTTCTTTCTGCTTTCTCTAATATGCAGAGGCTGGACACTGGCAGGAAGTTTTGA 702 0.4858 MPEKSSSLWTTMVCGYAQNFCSNEALDLFEDMVGEGFEPSGSTLASVLSACARSGCLELGERIHEFMMVKGVGLGDGVILGTALVYLYAKNGAIAMARRLFDEMSERNVVTWNAMICGLGAYGYVDDVLDLREWVVVPNGVTFVGVLSACCHAGLIDVGCEIFRSMKSVYGIELKIQHYGCLVDLHGRGASTNSGNTEVAERVVKEILALEPQNNVVLSAFSNMQRLDTGRKF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00508 233 Pfam PPR repeat 110 131 IPR002885 -
Gma16g00508 233 Pfam PPR repeat 141 168 IPR002885 -
Gma16g00508 233 Pfam PPR repeat 82 109 IPR002885 -
Gma16g00508 233 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Gma16g00508 233 Gene3D Tetratricopeptide repeat domain 133 233 IPR011990 GO:0005515
Gma16g00508 233 TIGRFAM PPR: pentatricopeptide repeat domain 8 40 IPR002885 -
Gma16g00508 233 TIGRFAM PPR: pentatricopeptide repeat domain 141 168 IPR002885 -
Gma16g00508 233 Gene3D Tetratricopeptide repeat domain 1 73 IPR011990 GO:0005515
Gma16g00508 233 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 190 225 - -
Gma16g00508 233 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 189 - -
Gma16g00508 233 Gene3D Tetratricopeptide repeat domain 74 132 IPR011990 GO:0005515
Gma16g00508 233 Pfam PPR repeat family 6 53 IPR002885 -
Gma16g00508 233 PANTHER OS11G0483950 PROTEIN 190 225 - -
Gma16g00508 233 PANTHER OS11G0483950 PROTEIN 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00508 Gma-Chr16 5626819 5627602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00508 1 224 Glycoside Hydrolase AT3G49170 31.373 1.31e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00508 - - gmx:113000421 369.392