Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00407 ATGGGTTCTTCTTCTTCTATGTGGACGGTGTGTGTGATTTTGGCATCACTGGCCTCTGCAGCACTCTGTGCCAACCCACGCAGGCCAGTGGATGTACAATTTGGCCGAAACTACGTGCCCACATGGGCCTTTGATCACATCAAATATTTCAATGGTGGTTCTGACATTCAGCTTCATCTTGACAAGTACACTGGTACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGTACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTCTGCAAACAAATGTGTTCACCGGAGGCAAGGGTGATAGAGAGCAAAGAATCTATCTCTGGTTTGATCCCACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGAGTGAAATTCCCATTCGACCAGCCAATGAAGATCTACAACAGTTTGTGGAACGCTGATGACTGGGCAACGAGGGGTGGTTTGGAGAAAACGGATTGGTCGAAAGCACCCTTCATAGCAGCGTACAAGGGGTTTCACATCGACGGGTGCGAGGCTTCGGTGAACGCCAAGTTCTGCGACACGCAGGGCAAGAGGTGGTGGGACCAGCCTGAGTTCCGTGACCTTGACGCCGCCCAGTGGCGTAGGCTCAGATGGGTGCGCCAGAAATACACCATCTACAACTACTGCACTGACACTAAACGCTATCCTCATATCTCTCCTCCTGAGTGCAAAAGAGACCGTGACATTTAA 891 0.4882 MGSSSSMWTVCVILASLASAALCANPRRPVDVQFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDTKRYPHISPPECKRDRDI 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00407 296 CDD GH16_XET 29 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma16g00407 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 294 IPR044791 GO:0004553
Gma16g00407 296 ProSitePatterns Glycosyl hydrolases family 16 active sites. 108 118 IPR008263 GO:0004553|GO:0005975
Gma16g00407 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 222 IPR000757 GO:0004553|GO:0005975
Gma16g00407 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 4 294 - -
Gma16g00407 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 294 IPR013320 -
Gma16g00407 296 Pfam Glycosyl hydrolases family 16 35 215 IPR000757 GO:0004553|GO:0005975
Gma16g00407 296 Gene3D - 19 296 - -
Gma16g00407 296 PIRSF EndGlu_transf 1 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma16g00407 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 242 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00407 Gma-Chr16 4324775 4326851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00407 1 296 Glycoside Hydrolase AT5G13870 78.041 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00407 K08235 - gmx:547775 624.394