LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma16g00406	ATGGCTTCGGCTACTCTCTCTGTAGCCAAACCAGCCCTTCAGGCAAATGGGAAAGGCTTCTCTGAATTCTCTGGCCTCCGCAGCTCATCAGGCTTCCTTCCCTTTTCTAGAAAATCTTCAGAGGATTTCCATTCTGTCATTGCCTTCCAGACCTATGCAGTTGGAAGCAGTGGAGGATACAAGAAGGGTGTGACAGAAGCAAAACTGAAGGTTGCCATAAACGGATTTGGAAGGATTGGAAGGAACTTCTTGAGGTGCTGGCACGGTCGCAAAGACTCCCCTCTTGATGTCATTGCCATCAACGACACCGGTGGCGTGAAACAAGCCTCTCACCTTCTCAAGTACGATTCGATCCTCGGAACCTTCGATGCTGATGTCAAGCCTGTTGGCAGCGACATCATCTCTGTCGATGGAAAGGAAATCAAAGTTGTCTCTGACCGCAACCCTGCCAACCTTCCTTGGAAGGATTTGGGGATAGACTTGGTGATTGAAGGAACTGGGGTGTTTGTAGACAGAGAAGGTGCAGGGAAACACATTCAAGCAGGAGCTAAGAAGGTGCTCATTACTGCTCCTGGTAAAGGAGACATCCCCACATATGTGGTTGGTGTCAATGAGTATGATTACAGCCCTGATGAACCCATCATCAGCAATGCATCTTGCACCACTAACTGCCTTGCACCCTTTGTCAAGGTCCTTGATCAGAAATTCGGTATCATCAAGGGCACCATGACCACCACTCACTCCTACACCGGCGACCAAAGGCTTCTCGACGCGAGCCACCGTGACCTGAGGCGCGCCAGGGCGGCAGCTCTCAACATTGTCCCCACTTCAACAGGAGCAGCAAAGGCAGTGGCCCTTGTCCTCCCAACCCTCAAGGGCAAACTCAATGGCATTGCACTCCGTGTGCCAACACCAAACGTCTCAGTGGTGGACCTCGTTGTTCAGGTCTCAAAGAAGACCTTTGCAGAAGAAGTGAATGCAGCATTCAGAGAGAGTGCAGACAATGAGCTCCAGGGAATCCTCTCTGTGTGTGATGAGCCACTTGTGTCTGTTGACTTCAGGTGCACTGATGTGTCCTCAACCGTTGACTCATCGTTGACCATGGTCATGGGAGATGACATGGTTAAGGTGATTGCTTGTGAGAGCCATCAAATTCTGAATTGGCCTTGGGGTCACGAACAAGATGGATAA	1191	0.5046	MASATLSVAKPALQANGKGFSEFSGLRSSSGFLPFSRKSSEDFHSVIAFQTYAVGSSGGYKKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSILGTFDADVKPVGSDIISVDGKEIKVVSDRNPANLPWKDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNEYDYSPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELQGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIACESHQILNWPWGHEQDG	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma16g00406	396	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	297	314	IPR020831	GO:0016620
	Gma16g00406	396	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	241	257	IPR020831	GO:0016620
	Gma16g00406	396	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	178	191	IPR020831	GO:0016620
	Gma16g00406	396	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	214	232	IPR020831	GO:0016620
	Gma16g00406	396	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	337	352	IPR020831	GO:0016620
	Gma16g00406	396	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	68	236	IPR036291	-
	Gma16g00406	396	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	225	379	IPR020829	GO:0016620
	Gma16g00406	396	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	220	379	-	-
	Gma16g00406	396	Gene3D	Dihydrodipicolinate Reductase; domain 2	219	379	-	-
	Gma16g00406	396	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	70	171	IPR020828	GO:0051287
	Gma16g00406	396	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	70	379	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Gma16g00406	396	SMART	gp_dh_n_7	69	220	IPR020828	GO:0051287
	Gma16g00406	396	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	1	381	IPR020831	GO:0016620
	Gma16g00406	396	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	218	225	IPR020830	GO:0016620
	Gma16g00406	396	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	1	381	-	-
	Gma16g00406	396	Gene3D	-	70	218	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma16g00406	Gma-Chr16	4312642	4315624	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma16g00406	K05298		-	gmx:100815649	705.286

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma19g01041	19	38178828	38181737	Gma16g00406	16	4312642	4315624	GST