Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00379 ATGGCTTCTAGTTCAGAATCTCAATCTCAGTCTAAACCGCTCCAAGACCGAGTTGCAATCGTCACCGGCTCGTCCCGCGGAATCGGCCGAGAAATCGCGCTTCACCTCGCCTCACTCGGCGCGCGACTCGTCGTCAACTACACCTCCAACTCGGCCCAAGCCGACTCAGTCGCGGCGCAGATCAACGCCGGTTCCGCCACCACGACACCGCGCGCCGTCGTGGTCCAAGCCGACGTGTCCGATCCGGCTCAGGTGAAGTCGCTCTTCGACTCGGCCGAGCGCGCCTTCGACTCGCCGATCCACATCCTTGTCAACTCGGCGGGCGTGATCGACGGCACGTATCCCTCCGTCGCCGACACCACCGTGGAGTCCTTCGACCGCACTTTCGCGGTGAACGCGCGTGGCGCCTTCGCGTGCGCCAGGGAGGCCGCGAACCGCCTCAAGCGCGGCGGCGGAGGGCGGATCATTCTACTGACGACATCGCAGGTGGTGGCGCTGAGGCCGGGGTACGGGGCGTACGCGGCGTCGAAGGCGGCGGTGGAGGCAATGGTGAAGATCCTGGCGAAGGAACTGAAAGGGACGCAGATAACGGCGAATTGCGTTGCGCCGGGACCGATTGCGACGGAGATGTTCTTCGAGGGTAAGACGGAGGAGGTGGTGAATCGGATCGTGCAAGAGAGTCCCTTGGGGAGGCTCGGTGAGACCAAAGACGTGGCACCCGTTGTGGGATTCTTGGCCACTGATGCTTCTGAATGGGTCAACGGTCAAATTGTTCGTGTCAACGGTGGCTATATTTAG 798 0.6253 MASSSESQSQSKPLQDRVAIVTGSSRGIGREIALHLASLGARLVVNYTSNSAQADSVAAQINAGSATTTPRAVVVQADVSDPAQVKSLFDSAERAFDSPIHILVNSAGVIDGTYPSVADTTVESFDRTFAVNARGAFACAREAANRLKRGGGGRIILLTTSQVVALRPGYGAYAASKAAVEAMVKILAKELKGTQITANCVAPGPIATEMFFEGKTEEVVNRIVQESPLGRLGETKDVAPVVGFLATDASEWVNGQIVRVNGGYI 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00379 265 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 1 265 - -
Gma16g00379 265 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 265 - -
Gma16g00379 265 Gene3D - 1 264 - -
Gma16g00379 265 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Gma16g00379 265 PRINTS Glucose/ribitol dehydrogenase family signature 98 109 IPR002347 -
Gma16g00379 265 PRINTS Glucose/ribitol dehydrogenase family signature 147 163 IPR002347 -
Gma16g00379 265 PRINTS Glucose/ribitol dehydrogenase family signature 173 192 IPR002347 -
Gma16g00379 265 PRINTS Glucose/ribitol dehydrogenase family signature 194 211 IPR002347 -
Gma16g00379 265 PRINTS Glucose/ribitol dehydrogenase family signature 228 248 IPR002347 -
Gma16g00379 265 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 209 - -
Gma16g00379 265 Pfam Enoyl-(Acyl carrier protein) reductase 23 264 - -
Gma16g00379 265 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 264 IPR036291 -
Gma16g00379 265 CDD THN_reductase-like_SDR_c 14 265 - -
Gma16g00379 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 98 109 IPR002347 -
Gma16g00379 265 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 173 192 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00379 Gma-Chr16 3961063 3962420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00379 12 263 Acyl Lipid Metabolism Gene Families AT1G24360 32.941 2.22e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00379 K00059 - gmx:100809416 486.878