Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00343 ATGCAAGTTTTTTCCATTGAAGGCGAAAGTGCTTTGTCAGTTGTTGGTCCAAGGCCAATGGAATGGTCTACTGTTCCATACAATGCCCCTCAAGCTCCTGGGCCAAATGGAAAGCAGCGGACCTCAAGTTTGGAATCACCGATCATGTTGCTGTCAGGTCACCAGAGTGCTATATATACCATGAAGTTCAATCCAGCAGGATCAGTCATTGCATCTGGATCTCATGACAGGGAAATTTTCCTCTGGAATGTGCATGGGGATTGCAAGAACTTCATGGTTCTGAAAGggGAAGTTACCATGACACTTCAAGGTCATCAAGACATGATTACTGATATGCAGCTGAGTCCTGATGGGTCCTACCTTCTTACAAATGGCATGGATTGCAAACTTTGCATTTGGGATATGCGTCCGTATGCTCCGCAAAATCGCTGTGTGAAGGTGTTGGAAGGGCATCAACACAACTTTGAAAAGAACTTATTGAAGTGCGGTTGGTCTCCTGATGGAAGCAAGGTAACAGCTGGTAGTTCTGATCGAATGGTTTACATCTGGGATACCACTTCTCGCCGCATCTTGTATAAGCTTCCCGGTCACAATGGATCTGTTAACGAGTGTGTTTTTCATCCCAATGAGCCTATTATTGGATCTTGTAGCAGTGACAAGCAGATTTATCTAGGGGAGATATGA 684 0.4459 MQVFSIEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYTMKFNPAGSVIASGSHDREIFLWNVHGDCKNFMVLKGEVTMTLQGHQDMITDMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00343 227 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 95 227 - -
Gma16g00343 227 SUPERFAMILY WD40 repeat-like 47 223 IPR036322 GO:0005515
Gma16g00343 227 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 227 IPR001680 GO:0005515
Gma16g00343 227 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 193 IPR001680 GO:0005515
Gma16g00343 227 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 31 97 - -
Gma16g00343 227 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 136 IPR001680 GO:0005515
Gma16g00343 227 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 136 - -
Gma16g00343 227 Gene3D - 43 96 IPR015943 GO:0005515
Gma16g00343 227 Gene3D - 97 227 IPR015943 GO:0005515
Gma16g00343 227 SMART WD40_4 95 134 IPR001680 GO:0005515
Gma16g00343 227 SMART WD40_4 44 83 IPR001680 GO:0005515
Gma16g00343 227 SMART WD40_4 187 226 IPR001680 GO:0005515
Gma16g00343 227 SMART WD40_4 141 184 IPR001680 GO:0005515
Gma16g00343 227 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 31 97 - -
Gma16g00343 227 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 95 227 - -
Gma16g00343 227 ProSitePatterns Trp-Asp (WD) repeats signature. 70 84 IPR019775 -
Gma16g00343 227 Pfam WD domain, G-beta repeat 97 134 IPR001680 GO:0005515
Gma16g00343 227 Pfam WD domain, G-beta repeat 190 224 IPR001680 GO:0005515
Gma16g00343 227 Pfam WD domain, G-beta repeat 143 184 IPR001680 GO:0005515
Gma16g00343 227 Pfam WD domain, G-beta repeat 47 83 IPR001680 GO:0005515
Gma16g00343 227 ProSitePatterns Trp-Asp (WD) repeats signature. 171 185 IPR019775 -
Gma16g00343 227 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 227 - -
Gma16g00343 227 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 84 IPR001680 GO:0005515
Gma16g00343 227 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 51 84 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00343 48 224 Miscellaneous Gene Families AT5G08390 27.684 3.72e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00343 K12857 - gmx:100789793 295.434