Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00313 ATGCTCTGCAAATTCCATTTCAAAAAGCAGCTTCTTTTCCCTCTAACCCCTTGTTCATTTGTCACTCAATGCACTCATTCATGGAGCATAATCAGAGCTTCAGTGCCCGTTCCTGAAGAAACCCATTTCAGGGACCCTCACATTGTTCATTTGTTTTGTGCCAATGCCCTCAAAGTTTCTGCCAGAAGGGCCCTTCTCCCTGAAGGAAAACAGCTACATGCCCATTTGATAAAGTTTGGATTTTGCCATGTTCTGTCCTTGCAAGATCAGATTTTGGGTGTTTATCTTAAGTGTATGGAAGCTGAAAATGTGGAGAAACTGTTTGAGGAATTGCCTTTGAGAAATGTGGTGTCATGGAATATTTTGATTCACGGTATTGTTGGATGTGGCAATGCAATTGAAAATTACTCAAATCGACAACTGTGTTTTTCTTATTTTAAAAGGATGTTGTTGGAAACAGTGGTTCCGGATGGTACAACTTTTAATGGTCTTATTGGTGTTTGTGTTAAGTTTCATGATATTGCCATGGGTTTCCAGTTGCATTGTTTTGCAGTGAAATTCGGATTAGATTTGGATTGTTTTGTGGGAAGTGTTCTTGTTGATTTATATGCAAAATGTGGATTAGTTGAGAATGCTAAAAGGGCTTTTCATGTTGTTCCACGTCCAGATTTGGTTATGTGGAATGTGATGATTTCTTGCTATGCATTGAATTGGTTACCAGAAGAGGCTTTTGGCATGTTCAACttgatgcgattgggtggtgcaaatggggatgaGATGGTGATTCGAAATGTTGTGGCGTGGAACACCATTATTGTTGGGTGTGAGAATTGTGGAGAAGGGAATGATGTTATGAAGCTTCTCAGAGAGATGCTTCGCGAAGGGTTTTTTCCCGATGAACTGACCATTTCCAGCATTATCAGTTCATGGGGCTATGCTTCTGCCATTACTGAAACAATGGAAGCTCATGTTTTTGTAGTTAAATCATCATTTCAAGAATTTTCATCTGTTGCTAACTCTTTGATTAGTGCGTACTCCAAGTGTGGTAGTATCACTAGTGCATGTAAATGCTTCAGATTAACTAGAGAACCTGACCTTGTTACATGGACTTCATTGATAAATGCATATGCATTCCATGGTCTTGCCAAAGAAGCAATTGAAGTGTTTGGGAAGATGCTATCTTGTGGAGTAATTCCGGATCGAATTTCCTTTCTTGGTGTTCTCTCTGCTTGTTCGCATTGTGGCCTTGTGACTAAGGGACTTCACTACTTTAACTTGATGACCAGTGTGTATAAGATTGTTCCTGATTCAGGTCAGTATACCTGCCTTGTTGACCTTCTTGGACGACGAGGTCTTATAAATGAGGCTTTTGAATTCTTGAGGTTAATGCCAATGGAAGCTGAATCAAATACATTAGGAGCATTTATTGGATCCTGCAATCTACATGAAAATATAGGAATGGCTAAATGGGCTGCAGAAAAGCTCTTCATCAAAGAACCAGAGAAGAATGTAAACTATGGGGTCATGTCTAACATTTATGCTTCCCATAGACATTGGTATGATGTGGAAGGAGTTCGAAGAATGATGGGGAACAAGTGTGATGCAAGAGTCCCGGGTTGCAGCTGGATAGAGATTAGTAATCAAGTTCATTCATTTGTATCCAATGATAAGACACACCTTAAAGCTTTATAA 1692 0.3877 MLCKFHFKKQLLFPLTPCSFVTQCTHSWSIIRASVPVPEETHFRDPHIVHLFCANALKVSARRALLPEGKQLHAHLIKFGFCHVLSLQDQILGVYLKCMEAENVEKLFEELPLRNVVSWNILIHGIVGCGNAIENYSNRQLCFSYFKRMLLETVVPDGTTFNGLIGVCVKFHDIAMGFQLHCFAVKFGLDLDCFVGSVLVDLYAKCGLVENAKRAFHVVPRPDLVMWNVMISCYALNWLPEEAFGMFNLMRLGGANGDEMVIRNVVAWNTIIVGCENCGEGNDVMKLLREMLREGFFPDELTISSIISSWGYASAITETMEAHVFVVKSSFQEFSSVANSLISAYSKCGSITSACKCFRLTREPDLVTWTSLINAYAFHGLAKEAIEVFGKMLSCGVIPDRISFLGVLSACSHCGLVTKGLHYFNLMTSVYKIVPDSGQYTCLVDLLGRRGLINEAFEFLRLMPMEAESNTLGAFIGSCNLHENIGMAKWAAEKLFIKEPEKNVNYGVMSNIYASHRHWYDVEGVRRMMGNKCDARVPGCSWIEISNQVHSFVSNDKTHLKAL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00313 563 Pfam E motif 482 544 IPR046848 -
Gma16g00313 563 PANTHER OS07G0259400 PROTEIN 258 559 - -
Gma16g00313 563 PANTHER OS07G0259400 PROTEIN 33 259 - -
Gma16g00313 563 Pfam PPR repeat family 263 308 IPR002885 -
Gma16g00313 563 PANTHER OS07G0578800 PROTEIN-RELATED 258 559 IPR045215 GO:0003723|GO:0009451
Gma16g00313 563 PANTHER OS07G0578800 PROTEIN-RELATED 33 259 IPR045215 GO:0003723|GO:0009451
Gma16g00313 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Gma16g00313 563 Pfam PPR repeat 440 464 IPR002885 -
Gma16g00313 563 Pfam PPR repeat 367 397 IPR002885 -
Gma16g00313 563 Pfam PPR repeat 339 359 IPR002885 -
Gma16g00313 563 Pfam PPR repeat 225 251 IPR002885 -
Gma16g00313 563 TIGRFAM PPR: pentatricopeptide repeat domain 225 251 IPR002885 -
Gma16g00313 563 TIGRFAM PPR: pentatricopeptide repeat domain 266 300 IPR002885 -
Gma16g00313 563 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Gma16g00313 563 Gene3D Tetratricopeptide repeat domain 199 326 IPR011990 GO:0005515
Gma16g00313 563 Gene3D Tetratricopeptide repeat domain 47 198 IPR011990 GO:0005515
Gma16g00313 563 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Gma16g00313 563 Gene3D Tetratricopeptide repeat domain 335 561 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00313 Gma-Chr16 3292311 3294681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00313 66 562 Glycoside Hydrolase AT3G49170 30.815 1.09e-70 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00313 - - gmx:100778378 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00631 07 6482306 6484240 Gma16g00313 16 3292311 3294681 GST