Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00196 ATGAGGCAAGTGAAGCAAATTCATGGTTACACTCTAAGAAATGGCATAGACCAGACCAAAATCCTTATTGAGAAGCTACTTGAAATCCCAAACCTTCACTATGCACACAAGGTGTTGCACCATTCCCCAAAGCCAACCCTTTTCCTCTACAACAAGCTCATTCAAGCCTACTCCTCCCACCCTCAACACCAACACCAATGTTTCTCCCTTTACTCCCAAATGCTCCTTCATAGCTTCCTACCAAACCAACACACTTTCAACTTTCTCTTCTCTGCATGCACCTCCCTTTCTTCCCCATCCCTTGGCCAAATGCTCCATACCCATTTCATCAAATCAGGCTTTGAACCTGACCTCTTTGCAGCCACTGCTTTGCTTGACATGTATACAAAAGTTGGTACTTTGGAGCTGGCACGCAAACTGTTTGATCAAATGCCTGTGAGAGGGGTGCCCACGTGGAATGCTATGATGGCTGGGCATGCAAGATTTGGTGATATGGATGTAGCTTTGGAATTGTTTAGATTGATGCCTTCTAGGAATGTGGTGTCATGGACCACCATGATATCAGGTTACTCGCGGAGCAAAAAGTACGGGGAGGCTTTGGGGTTGTTCCTGAGGATGGAGCAGGAGAAAGGGATGATGCCCAATGCAGTAACCTTGGCAAGCATTTTTCCAGCTTTTGCAAATCTTGGAGCACTGGAGATTGGGCAGAGGGTTGAAGCATACGCAAGGAAGAATGGGTTCTTTAAGAATTTATATGTGAGCAATGCTGTGTTGGAGATGTATGCAAAATGTGGTAAGATTGATGTTGCTTGGAAGGTGTTCAATGAGATTGGCAGCTTGAGAAACTTGTGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTCCATGGAGAATGTTGCAAGACCCTTAAGCTTTATGATCAAATGCTGGGAGAAGGAACTTCACCTGATGATGTGACATTTGTGGGGCTCCTCTTGGCATGTACTCATGGAGGCATGGTTGAAAAAGGCAGGCATATCTTCAAGTCAATGACCACATCCTTCAACATTATTCCCAAACTAGAACACTATGGATGCATGGTTGATCTCCTAGGCCGTGCCGGGCAATTGAGAGAAGCTTATGAGGTAATACAAAGAATGCCCATGAAACCAGACTCAGTGATATGGGGAGCTCTATTGGGAGCTTGCAGCTTCCATGATAATGTTGAGCTGGCTGAGATTGCAGCCGAGTCTCTATTTGCACTTGAGCCTTGGAATCCAGGAAACTATGTCATTCTTTCCAACATTTATGCATCAGCTGGCCAATGGGATGGAGTTGCAAAGCTCAGGAAAGTGATGAAGGGAAGCAAAATTACAAAGTCAGCTGGACATAGTTTCATTGAAGAGGGAGGCCAACTGCATAAGTTCATTGTGGAAGATAGATCACATCCTGAAAGCAACGAAATTTTTGCCTTGCTTGATGGAGTTTATGAAATGATAAAGCTTAATAGAAGTGCATTTGAATGTCATTTGGATCTTGATTTGAGCAACTATTCATAG 1539 0.4418 MRQVKQIHGYTLRNGIDQTKILIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGGQLHKFIVEDRSHPESNEIFALLDGVYEMIKLNRSAFECHLDLDLSNYS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00196 512 Gene3D Tetratricopeptide repeat domain 282 481 IPR011990 GO:0005515
Gma16g00196 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Gma16g00196 512 TIGRFAM PPR: pentatricopeptide repeat domain 357 380 IPR002885 -
Gma16g00196 512 TIGRFAM PPR: pentatricopeptide repeat domain 181 216 IPR002885 -
Gma16g00196 512 TIGRFAM PPR: pentatricopeptide repeat domain 151 181 IPR002885 -
Gma16g00196 512 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Gma16g00196 512 Pfam PPR repeat 122 149 IPR002885 -
Gma16g00196 512 Pfam PPR repeat 356 381 IPR002885 -
Gma16g00196 512 Pfam PPR repeat 255 277 IPR002885 -
Gma16g00196 512 Pfam PPR repeat 285 313 IPR002885 -
Gma16g00196 512 PANTHER OS06G0125600 PROTEIN 2 461 - -
Gma16g00196 512 Gene3D Tetratricopeptide repeat domain 135 245 IPR011990 GO:0005515
Gma16g00196 512 Gene3D Tetratricopeptide repeat domain 13 134 IPR011990 GO:0005515
Gma16g00196 512 Pfam PPR repeat family 178 227 IPR002885 -
Gma16g00196 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 214 IPR002885 -
Gma16g00196 512 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 461 - -
Gma16g00196 512 Pfam E motif 399 461 IPR046848 -
Gma16g00196 512 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00196 Gma-Chr16 2094701 2096682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00196 5 494 Glycoside Hydrolase AT3G49170 33.602 7.66e-93 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00196 - - gmx:100790321 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00196 16 2094701 2096682 Gma16g00196 16 2094701 2096682 ECH