Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00164 ATGGCAACATTGACTGCTTCAAGTAACTTAGTCTCTAGAAATTCTCATGTCCATCATGGACCAACAACTGCTTCATATGAGTCTAAAGCAGTAGCAATGGGACTTAGATCTCTAAAGCAGACAAATACTCATAGTGGACTTAGAATTTTTAACCCGGTGGATGAGCTACTTAACAGAACCCCAATTAAAACCAATGCAATGCAAGCTATGAGGAAGGGACCTCAAGGCAAGAATGCCTGGCCTAAAGGTATAATCACATGTGGCATGACTTTCATAATTATAGGAACGGAGGTGGCTCCATGGTGCAAAACTGGTGGGTTAGGAGATGTTCTTGGAGGTCTACCACCAGCATTGGCAGGTTTCGGGCATCGAGTAATGACTATTGTGCCACGCTATGACCAGTACAAAGATGCATGGGATACAGGTGTTGTAATTGAGGTGAAAGTAGGAGATAGAACAGAAAAGGTTCGCTTCTTCCATTGCTATAAGAGGGGAGTTGATCGTGTCTTTGTGGATCACCCTTGGTTTCTTGAAAAGGTCTGGGGCAAAACTGGACAAAAACTTTATGGACCAACTACAGGAGATGATTACGAAGACAACCAACTGCGTTTTAGCCTCTTTTGCCAGGCTGCTTTGGAAGCCCCAAGGGTTCTGAGTCTTAATTCCAGTAAATATTTCTCTGGACCATATGGTGAAGATGTCATTTTCGTCGCCAATGATTGGCACACTGCCCTTATCCCCTGCTACTTGAAAAGTATGTACCAGCCAAGGGGCATCTATATGAATGCCCGGGTTGTTTTTTGTATCCACAACATTGCTTACCAAGGAAGATTTGCATTCGCCGACTTCTCACTTCTAAATCTCCCAGACCAATTTAAGAGCTCCTTTGACTTTATTGATGGGCATGTTAAACCAGTGGTTGGAAGGAAAATCAATTGGTTGAAAGCTGGACTTATAGAATCATGGTTTGTGATAACTGTTAGCCCAAACTATGCTAAAGAACTGGTGTCAGGTCCAGACAAGGGAGTGGAATTGGACAACATCCTTCGCAAAATTGATGATGATGGTCGTTTGGTTGGAATTGTGAATGGCATGGATGTTCAGGAGTGGAATCCAACCACTGACAAATATATAGCTGTCAAATACGATGTTTCAACAGTATTGGAAGCAAAGGCTCTTTTGAAAGAAGCCCTCCAAGCAGAAGTTGGATTGCCGGTCGACAGAAATATTCCTCTTATTGGTTTCATTGGTAGGCTTGAAGAGCAAAAAGGTTCTGATATTCTTGCAGAAGCTATTCCCCAATTTATCAAGGAGAATGTTCAGTTGGTAGCCCTAGGAACAGGAAAAAAACAAATGGAAAAACAACTACAGGAACTTGAAATATCATACCCTGACAAGGCCAGAGGAGTGGCAAAATTCAATGTTCCCCTAGCCCACATGATAATTGCTGGAGCTGATTTTATATTGGTTCCTAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTATGGATCTGTACCAATTGTTGCCTCAACAGGTGGATTAGTTGACACTGTCAAAGAAGGTTTCACTGGATTTCAGATGGGTGCCTTCAGTGTTGAATGTGATGCTGTGGATCCAGCTGATGTGGATGCTATAGCAAAGACTGTCAAAAGGGCCCTTGCAGTCTATGGAACTCCAGCTTTTACAGAAATAATAAAGAACTGCATGGCTCAAGATCTTTCCTGGAAGGGGCCTGCTAAGAAGTGGGAGGAAGTGCTGCTAAGCCTGGGAGTTCCTGGCAGTGAACCTGGAAGTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTGGCAACACCATAA 1860 0.4323 MATLTASSNLVSRNSHVHHGPTTASYESKAVAMGLRSLKQTNTHSGLRIFNPVDELLNRTPIKTNAMQAMRKGPQGKNAWPKGIITCGMTFIIIGTEVAPWCKTGGLGDVLGGLPPALAGFGHRVMTIVPRYDQYKDAWDTGVVIEVKVGDRTEKVRFFHCYKRGVDRVFVDHPWFLEKVWGKTGQKLYGPTTGDDYEDNQLRFSLFCQAALEAPRVLSLNSSKYFSGPYGEDVIFVANDWHTALIPCYLKSMYQPRGIYMNARVVFCIHNIAYQGRFAFADFSLLNLPDQFKSSFDFIDGHVKPVVGRKINWLKAGLIESWFVITVSPNYAKELVSGPDKGVELDNILRKIDDDGRLVGIVNGMDVQEWNPTTDKYIAVKYDVSTVLEAKALLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILAEAIPQFIKENVQLVALGTGKKQMEKQLQELEISYPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGLIQLQAMRYGSVPIVASTGGLVDTVKEGFTGFQMGAFSVECDAVDPADVDAIAKTVKRALAVYGTPAFTEIIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGSDGEEIAPQAKENVATP 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00164 619 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 89 592 IPR011835 GO:0004373
Gma16g00164 619 Gene3D Glycogen Phosphorylase B; 93 585 - -
Gma16g00164 619 Pfam Glycosyl transferases group 1 410 531 IPR001296 GO:0016757
Gma16g00164 619 MobiDBLite consensus disorder prediction 1 23 - -
Gma16g00164 619 PANTHER GRANULE-BOUND STARCH SYNTHASE 1 619 - -
Gma16g00164 619 MobiDBLite consensus disorder prediction 596 619 - -
Gma16g00164 619 Hamap Glycogen synthase [glgA]. 89 594 IPR011835 GO:0004373
Gma16g00164 619 Pfam Starch synthase catalytic domain 92 351 IPR013534 -
Gma16g00164 619 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 1 619 - -
Gma16g00164 619 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 79 591 - -
Gma16g00164 619 Gene3D Glycogen Phosphorylase B; 366 576 - -
Gma16g00164 619 MobiDBLite consensus disorder prediction 1 22 - -
Gma16g00164 619 CDD GT5_Glycogen_synthase_DULL1-like 97 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00164 Gma-Chr16 1661785 1666373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00164 1 619 Glycosyltransferase AT1G32900 69.936 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00164 K13679 - gmx:100817424 1212.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00164 16 1661785 1666373 Gma16g00164 16 1661785 1666373 ECH
Gma07g00469 07 4318534 4323066 Gma16g00164 16 1661785 1666373 GST