Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00078 ATGACCGACTATTTCTCCGGTTCCGTTGAATTCGGACTCAACCTCTCTAAGCGAGTATACTACGGCAAAGGATCGGCTCCGTCGCCTGCACCGGCGATGTCGCGGTCCCTATCGAAGTCGCCGGAAGGATACCTCCCGACGGCGCCGATGTGCTACGCCGTGATATCGGATCCGGAGAAGGTGGAGAATCCGGACATTCGGAGCTACCAGCCGTACGTGCTCGGTCAGTGCGAGCCTCCGGCGCTGATACCGCTGGAGCTTCACGGCGTGGGCATGGAAGTTGAATGCTCCTTGGACACGGCGTTCGTAACGGTCTCCGGGAAGTGGCGCGTGCATTGCGTGACAGCAAGTAGTACGTGTGATTGCCAGGTTGCCATACCTATAGGTGAAGAGGGTTCACTTCTAGGTCTAGAGGTTGATGGTTCTGGAAAATCTTATCATACTGAATTGATCTCTCTGAAAGACGAAAAGGATAAGGATAAAGTGGCCAAAGCTAAAGACGGATACTTTGTGAAAAGCCATATATACACCGTTAAGATTCCACAGTTTAGGGGTGGCTCTGTCTTCTCAATTAAGATCAGATGGTCACAGAAAATATTATTTCATGATGGCCAGTTATCTCTCTGTGTCCCTTTCAGCTTTCCCTCATACGTCAACCCTGCTGGAAGAAAAATTTCTAAGAAAGAGAAGATATTTTTGAAAGTGAATTCTGGTGCTACAACGGAAGTGTTATGCAAAACCACCAGTCATCCCTTTAAGGAACTACTGCGCCAAGCTGGCAAATTAAATTTATCATATGAAGCAGAAGTGCCTGCATGGTCAAGTACAGACTTAAGTTTTTCGTACTCTGTTTCTTCCAATGACATATTTGGAGCAGTTCTCTTGCAATCTCCATTCCTGCGTGATTTTGACGAAAGAGAGATATTTTGCTTGTATCTTTACCCGGGAAACAGCCCGGATAGAAAGGTTTTTAAAAAGGATGTGGTGTTTGTAGTAGATATAAGCGCAAGTATGAAGGGAACTCCTCTTGATAACACTAAGAATGCGCTACTGACATCACTCTCTCAACTAAGTGCACAAGATACATTTAACATTATAGCTTTCAATGGGACGGTTTACTTATTTTCATCATCAATGGAAAGAGCTACAGAGGAAGCAATTTTAAATGCTACCACGTGGGTTGACACCAATTTTATTGCTAATGGTGACACTAATATCATGCTTCCCTTAACACAGGCAATGAAGCTACTTGAGAAATCAACTGATTCGGTCCCTCTTATTTTTCTCGTTACCGATGGGGCTGTTGAGGATGAGAGAGATATATGCAATTTTGCGAAAAGCTATGTCTCAAGTGGGCAATTGGTTCGAACACCTCGCATATATACTTTTGGCATAGGCAAGAATTCTAGCTTCCTCTTCTATTTATACTCTTCAGCAAATAGTCTATATTGTAATCACTACTTCCTGCAAATGCTAGCACAAATTGGGAGGGGCCACTATGATTCTGCTCATGATTTAGATTCAATTGACTTTAGAATGCAAAGGCTATTCAGTACAGCTTCATCAGTTATGGTTGCTGATATAACAATCAAAAGTTTAGAAGGTCTTGATTCACTTGAGTTATTCCCAACTCATATACAAGATATATCATTTGAAAGTCCGTTGATCCTATCAGGAAGATACAGTGGAACTTTTCCTGAATTAGTTAAAGTCACTGGTACTTTGGCAAATAAGACTAACTTCGTAGTAGGCCTTAAAGTGAAAAGAGAAAAGGATATGCAGCTCAGTAATGTCCTTTCAAAGAGACATATAGACCAGGTCACTGCTCAAGCATGGTTGTTAAAAAGTGAAGAGCTGGAGGAGAAGGTCACTAAAATGAGCATTCAAAATAAAGTCCCGTCAGAGTATACCTGCATGAACATGGTTCTTGTACAGAGTGATGAAGGGAAGAAGACACCTGAACAATTTCTGTTACAAAAGGCATACAACAAACTTAGCTTCCAGAAGTTGGAACTCAACAACCAGAACTTATTTCTTGGAGGGTTGAGTCTTGGATTTGGTGACTTGAAAGCAACAGCTGAGAATTTGCCACCAGCTATAAAAGAAGCAAAACCACCTGAAGGACTACTGGGGAGGGCTGCTTCGAATTGCTGTGGTCGATTGGCTGATACCTGTTGTGGCATGTGTCTGTTGCAGACTTGCACTTTTGTCAATGACCAGTGCACCATCGTTTGCACTCAGATTTGTGCAGCCCTGGCCTGTTTTGAGCTAATCAAATGCTGTGTTGAGCTCTGCGATCTTTCTTATTTCGCCATAGAGTCAGAGGGAAGTCTGTGTTCTTCACCAGTTGCGGCTGCTACTTACTGTACGAGCTTGGTTCTTCAAATGAGATCCCCTTCTGTTGGATTCACCGGAATACTTGTGCTTCTTGTTTTCCTCTCTGCTTGCTGTTCTTCTACACATGGGAGTTTGGAAACGGAGAAAACTTTTGCCATTATAAAACCAGACGGATTGCTTGGTAACTACACAGATGATATCAAGAGAACAATTGTAGAATATGGTTTCAGAATTTTAAAGGAAAAGATTGTTCAACTCGATGAGGGCACTGTGAAAAGTTTTTATGCTGAGCACTCTTCAAAAAGCTTCTTTTCAAGCCTTATAAAATACATGACAAGTGGACCAGTGTTAATTATGGTCTTGGAGAAGGACAATGCTATTGCTGATTGGCGCGCTTTAATGGGTCCTACTGATGCAAGCAAGGCTAAGATTACTCACCCTCACAGTATCAGAGCAAAATGTGGATTGGATATGGAAAAGAATTGTGTTCATGGTTCAGACTCTCCCAAATCTGCGCAAAGAGAGATATCATTTTTCTTTAAAGAGCTCTCTGCAGATGTGGTTGCAGAGCATGATGAATTGTAG 2922 0.4254 MTDYFSGSVEFGLNLSKRVYYGKGSAPSPAPAMSRSLSKSPEGYLPTAPMCYAVISDPEKVENPDIRSYQPYVLGQCEPPALIPLELHGVGMEVECSLDTAFVTVSGKWRVHCVTASSTCDCQVAIPIGEEGSLLGLEVDGSGKSYHTELISLKDEKDKDKVAKAKDGYFVKSHIYTVKIPQFRGGSVFSIKIRWSQKILFHDGQLSLCVPFSFPSYVNPAGRKISKKEKIFLKVNSGATTEVLCKTTSHPFKELLRQAGKLNLSYEAEVPAWSSTDLSFSYSVSSNDIFGAVLLQSPFLRDFDEREIFCLYLYPGNSPDRKVFKKDVVFVVDISASMKGTPLDNTKNALLTSLSQLSAQDTFNIIAFNGTVYLFSSSMERATEEAILNATTWVDTNFIANGDTNIMLPLTQAMKLLEKSTDSVPLIFLVTDGAVEDERDICNFAKSYVSSGQLVRTPRIYTFGIGKNSSFLFYLYSSANSLYCNHYFLQMLAQIGRGHYDSAHDLDSIDFRMQRLFSTASSVMVADITIKSLEGLDSLELFPTHIQDISFESPLILSGRYSGTFPELVKVTGTLANKTNFVVGLKVKREKDMQLSNVLSKRHIDQVTAQAWLLKSEELEEKVTKMSIQNKVPSEYTCMNMVLVQSDEGKKTPEQFLLQKAYNKLSFQKLELNNQNLFLGGLSLGFGDLKATAENLPPAIKEAKPPEGLLGRAASNCCGRLADTCCGMCLLQTCTFVNDQCTIVCTQICAALACFELIKCCVELCDLSYFAIESEGSLCSSPVAAATYCTSLVLQMRSPSVGFTGILVLLVFLSACCSSTHGSLETEKTFAIIKPDGLLGNYTDDIKRTIVEYGFRILKEKIVQLDEGTVKSFYAEHSSKSFFSSLIKYMTSGPVLIMVLEKDNAIADWRALMGPTDASKAKITHPHSIRAKCGLDMEKNCVHGSDSPKSAQREISFFFKELSADVVAEHDEL 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00078 973 Pfam von Willebrand factor type A domain 327 468 IPR002035 -
Gma16g00078 973 Gene3D von Willebrand factor, type A domain 325 520 IPR036465 -
Gma16g00078 973 SUPERFAMILY Nucleoside diphosphate kinase, NDK 826 962 IPR036850 -
Gma16g00078 973 SUPERFAMILY vWA-like 326 512 IPR036465 -
Gma16g00078 973 SMART VWA_4 325 497 IPR002035 -
Gma16g00078 973 PANTHER INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN-LIKE PROTEIN 1 766 - -
Gma16g00078 973 ProSitePatterns Nucleoside diphosphate kinases active site. 940 948 IPR023005 -
Gma16g00078 973 ProSiteProfiles VWFA domain profile. 327 516 IPR002035 -
Gma16g00078 973 Pfam Nucleoside diphosphate kinase 827 961 IPR034907 -
Gma16g00078 973 PANTHER INTER ALPHA-TRYPSIN INHIBITOR, HEAVY CHAIN-LIKE PROTEIN 1 766 - -
Gma16g00078 973 Gene3D - 820 971 IPR036850 -
Gma16g00078 973 PRINTS Nucleoside diphosphate kinase signature 893 910 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma16g00078 973 PRINTS Nucleoside diphosphate kinase signature 829 851 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma16g00078 973 PRINTS Nucleoside diphosphate kinase signature 873 892 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma16g00078 973 PRINTS Nucleoside diphosphate kinase signature 940 959 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Gma16g00078 973 SMART ndk_5 826 966 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00078 Gma-Chr16 832078 845866 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00078 - - gmx:100807956 1384.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00382 07 3453796 3455507 Gma16g00078 16 832078 845866 GST