Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02342 ATGATGTCTGTCACAGGCAAAGGCATTGATTTTGCTGGCAAAAACTTGGTCTCTGGCTGCTCTTCAAATGCTTCGTTTGATTGGTACACTGTGAGGAACTATGCCAAGGCGAATAGTAATAATTCTAATGGGTGTGGCAGAGGCCATGGACGTAAATTGGTTTGTTGTAAGAGGAGGAGCACTCAATGTCGGGTTTCTTCTATGAAGACTGCACAGCCTACTGTGAATGGGGGGACTCATGCAATTGAAGGCCTTACCACAGGATTGGACTTGAAGGGTTATTCAGAAGCCCCCATTTCCCCAGCTAGGTTTTTTGAAGCGGTTGCCGATGATTTGCTAACTCTCAATAAAAATCTTCAGTCGATTGTTGGAGCAGAAAATCCTGTTTTGATGTCTGCAGCTGAGCAGATTTTTAGTGCTGGTGGGAAGAGGATGAGACCAGCTCTGGTGTTCTTGGTGTCAAGGGCGACTGCAGAGTTACTTGGCTTGAAGGAACTTACTGTAAAGCATCGACGTTTAGCAGAGATAATTGAAATGATTCATACTGCAAGCTTGATACATGATGATGTACTAGATGAGAGTGACCTTCGACGAGGGAAGAAAACTGTTCATCAAATGTTTGGAACAAGAGTTGCAGTGCTGGCTGGAGACTTCATGTTTGCACAGTCATCATGGTATCTAGCCAACCTTGAAAATATTGAAGTCATTAAACTTATCAGCCAGGTGATCAAAGATTTTGCAAGTGGGGAAATAAAGCAGGCTTCGAGCTTGTTTGATTGTGATGTACAACTTGATGAGTATCTAATTAAGAGCTATTACAAGACAGCGTCGTTGATTGCTGCCAGCACAAAAGGAGCTGCGATCTTTAGTGGTTCTGACAGCAGTGTCACTGAGAAAATGTATGAATATGGAAAGAATCTTGGTCTATCCTTTCAAGTTGTGGATGACATATTGGATTTCACGCAATCAGCGGAGCAACTGGGAAAGCCTGCTGGCAGTGACCTTGCCAAGGGCAACCTGACTGCACCAGTGATTTTTGCACTGGAGAAAGAACCAAAATTGAGGGATATCATTGAGTCTGAATTCAGTGAGGTTGGTTCGCTTGACGAGGCCATCAATTTGGTCAAGAGTTGTGGGGGCATTGAAAGAGCACAAGAGTTAGCAAAAGAGAAAGCTGATCTTGCAATTCAAAGTCTCCAATGCCTACCTCAGAGTGTGTTTCGTTTAGCCCTTGAGGATATGGTGGCATATAACCTTCAACGGATTGCATAA 1272 0.4371 MMSVTGKGIDFAGKNLVSGCSSNASFDWYTVRNYAKANSNNSNGCGRGHGRKLVCCKRRSTQCRVSSMKTAQPTVNGGTHAIEGLTTGLDLKGYSEAPISPARFFEAVADDLLTLNKNLQSIVGAENPVLMSAAEQIFSAGGKRMRPALVFLVSRATAELLGLKELTVKHRRLAEIIEMIHTASLIHDDVLDESDLRRGKKTVHQMFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVQLDEYLIKSYYKTASLIAASTKGAAIFSGSDSSVTEKMYEYGKNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLRDIIESEFSEVGSLDEAINLVKSCGGIERAQELAKEKADLAIQSLQCLPQSVFRLALEDMVAYNLQRIA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02342 423 ProSitePatterns Polyprenyl synthases signature 1. 185 199 IPR033749 -
Gma15g02342 423 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 6 422 - -
Gma15g02342 423 SFLD Isoprenoid Synthase Type I 133 416 - -
Gma15g02342 423 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 6 422 - -
Gma15g02342 423 ProSitePatterns Polyprenyl synthases signature 2. 307 319 IPR033749 -
Gma15g02342 423 CDD Trans_IPPS_HT 125 421 IPR000092 GO:0008299
Gma15g02342 423 Gene3D Farnesyl Diphosphate Synthase 100 422 IPR008949 -
Gma15g02342 423 Pfam Polyprenyl synthetase 129 374 IPR000092 GO:0008299
Gma15g02342 423 SUPERFAMILY Terpenoid synthases 103 421 IPR008949 -
Gma15g02342 423 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 100 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02342 Gma-Chr15 49725637 49729875 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02342 K05356 - gmx:100805842 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02342 15 49725637 49729875 Gma15g02342 15 49725637 49729875 ECH