Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g02002 ATGGCTTCATATACCCCAAAGAATATCCTTATTACTGGGGCTGCTGGATTTATTGCGTCTCATGTTGCCAACCGGCTTGTCCGGAGCTACCCTGACTACAAAATTGTCGTGCTTGACAAACTTGATTATTGTTCTAATCTAAAGAATCTCCTTCCTTCAAAATCATCCCCCAACTTCAAGTTTGTGAAGGGGGATATTGGTAGTGCTGATCTTGTTAACTACCTTCTCATCACTGAGTCCATTGACACTATAATGCACTTTGCTGCCCAAACCCATGTTGACAACTCGTTTGGAAATAGCTTTGAGTTCACCAAGAACAACATATATGGAACCCATGTCCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAGAAGGTTCATTCATGTGAGCACCGATGAGGTCTATGGAGAGACGGAAGAGGATGCTGTTGTTGGAAACCATGAGGCTTCTCAACTTCTTCCCACAAACCCATACTCTGCCACAAAAGCTGGGGCTGAAATGCTTGTCATGGCTTATGGTAGGTCATATGGGTTACCTGTTATTACAACTCGTGGAAACAATGTTTATGGGCCCAACCAGTTTCCTGAGAAGTTGATTCCAAAGTTCATCCTCCTGGCTATGCAGGGAAAGAATCTTCCAATTCATGGGGATGGTTCAAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTGTCCTTCACAAGGGAGAGGTTGGTCATGTTTACAATATCGGGACAAAGAAGGAAAGGAGAGTTATCGATGTAGCCAAAGATATATGCAGACTTTTCTCTATGGACCCAGAAATTTGTATAAAATTTGTAGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATCAAAAGCTGAAGGACTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAAGGCTTGAAGAAAACCATGGATTGGTATATTAATAACCCTGATTGGTGGGGTGATGTCACTGGGGCATTGCTTCCTCATCCTAGGATGCTGATGATGCCTGGCGGGTTGGATAGGCATTTTGAGGGATCTGAAGAGGAAAAACCTGCATCTTTTGGCTCAAGTAATACCAGGATGGTGGTTCCACCGTCCAAGAACACCAGCTCTCAACATAAACATCCTTTTAAGTTCTTGATCTATGGTAGAACAGGGTGGATTGGGGGTTTGCTTGGGAAATTGTGTGAAAAGCAAGGAATTCCGTACGAATATGGAAAGGGTCGCCTAGAGGACCGCTCCTCACTCATGGCTGATCTTCAGAATGTGAAGCCCACACATGTTTTTAATGCTGCAGGAGTGACTGGCAGACCCAATGTTGATTGGTGTGAATCCCATAAAACAGAAACCATCCGCACCAATGTTGTTGGCACCTTAACAATGGCTGATGTCTGCAGAGAGCATGGGATCTTGATGGTTAATTATGCTACTGGGTGCATATTTGAGTATAATGCAACACATCCTGAAGGCTCTGGCATTGGTTTTAAGGAGGAAGACAAGCCCAATTTCATTGGCTCTTTCTATTCCAAAACTAAAGCTATGGTTGAGGAGCTCTTGAGAGAATATGACAATGTATGCACACTCAGGGTTCGCATGCCAATTTCATCTGACCTGAGCAACCCACGCAACTTCATAACGAAGATTTCTCGTTATAACAAAGTAGTCAACATTCCAAACAGTATGACTATTTTGGATGAACTTCTGCCTATCTCAATTGAGATGGCAAAGAGGAACTTGAGGGGAATCTGGAACTTCACAAATCCAGGGGTTGTGAGCCACAATGAGATCCTTGAGATGTACAGGGATTACATTGACCCCAACTTCAAGTGGGCTAACTTCACCCTTGAAGAGCAAGCGAAGGTGATCGTTGCTCCTCGAAGCAACAACGAGATGGATGCATCCAAATTGAAGACGGAATTCCCAGAATTGCTTTCCATCAAGGAATCACTCATCAAATATGTCTTTGAGCCAAACAAGAAAACATAA 2007 0.4335 MASYTPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLLPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETEEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKNLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVIDVAKDICRLFSMDPEICIKFVENRPFNDQRYFLDDQKLKDLGWSERTTWEEGLKKTMDWYINNPDWWGDVTGALLPHPRMLMMPGGLDRHFEGSEEEKPASFGSSNTRMVVPPSKNTSSQHKHPFKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLMADLQNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVVGTLTMADVCREHGILMVNYATGCIFEYNATHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLREYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYRDYIDPNFKWANFTLEEQAKVIVAPRSNNEMDASKLKTEFPELLSIKESLIKYVFEPNKKT 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g02002 668 MobiDBLite consensus disorder prediction 358 377 - -
Gma15g02002 668 Gene3D - 9 313 - -
Gma15g02002 668 Gene3D - 374 668 - -
Gma15g02002 668 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 381 657 IPR036291 -
Gma15g02002 668 TIGRFAM dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 8 328 IPR005888 GO:0008460|GO:0009225
Gma15g02002 668 CDD dTDP_HR_like_SDR_e 385 657 - -
Gma15g02002 668 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Gma15g02002 668 Pfam RmlD substrate binding domain 385 555 IPR029903 -
Gma15g02002 668 MobiDBLite consensus disorder prediction 351 377 - -
Gma15g02002 668 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Gma15g02002 668 Gene3D - 200 322 - -
Gma15g02002 668 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 333 IPR036291 -
Gma15g02002 668 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 666 - -
Gma15g02002 668 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 1 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g02002 Gma-Chr15 33380521 33382862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g02002 8 321 Miscellaneous Gene Families AT4G00110 26.488 1.44e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g02002 K12450 - gmx:100785885 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g02002 15 33380521 33382862 Gma15g02002 15 33380521 33382862 ECH