Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01868 ATGATTGAAAGAGGGTTCTCTCCTAGTTCAGTTATCTGTAGCAAAATAGTCATCAGTCTTTATAAGTATGATAGAATCAATGAAGCAACTGGGATCCTAGACAAGATGGTGGATTTTGATCTTCTTACAGTTCATAAATGTTCTGATAAGTCTGTTAAAAATGATTTCATAAGTCTAGAAGCTCAGGGAATTGCGGACTCTCTTGATAAGAGTGCTGTATGTAATTCTCTTCCCAACAGTATTGTGTACAACATAGCTATCTATGGTCTTTGTAAGTCTGGGAAGATTGATGAAGTAAGAAGTGTTCTGTCAATTTTGTTGTCTAGAGGGTTTCTTCACGATAATTTTACATATGGTACCCTAATTCATGCCTGTTCAGCTGCTGGTGATGTGGATGGCGCTTTCAACATAATGGATGAGATGGTGGAAAGAGGTCTTATCCCAAATATTACTACTTATAATGCGTTAATAAATGGGTTTTGCAAAGTAGGAAATATGGATAGAGCACAGAGACTTTTCCATAAACTTCCTCAAAAAGGCTTAGTTCCCAATGTTGTTACCTATAATATACTAATCAGTGGTTACTGTAGAATTGGTGATCTTAATGAAGCCTCTAAATTGAGAGAGAAGATGATAGAAGGAGGGATTTCTTGA 654 0.3624 MIERGFSPSSVICSKIVISLYKYDRINEATGILDKMVDFDLLTVHKCSDKSVKNDFISLEAQGIADSLDKSAVCNSLPNSIVYNIAIYGLCKSGKIDEVRSVLSILLSRGFLHDNFTYGTLIHACSAAGDVDGAFNIMDEMVERGLIPNITTYNALINGFCKVGNMDRAQRLFHKLPQKGLVPNVVTYNILISGYCRIGDLNEASKLREKMIEGGIS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01868 217 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Gma15g01868 217 TIGRFAM PPR: pentatricopeptide repeat domain 81 112 IPR002885 -
Gma15g01868 217 TIGRFAM PPR: pentatricopeptide repeat domain 152 185 IPR002885 -
Gma15g01868 217 TIGRFAM PPR: pentatricopeptide repeat domain 116 150 IPR002885 -
Gma15g01868 217 TIGRFAM PPR: pentatricopeptide repeat domain 186 217 IPR002885 -
Gma15g01868 217 Pfam PPR repeat family 78 125 IPR002885 -
Gma15g01868 217 Pfam PPR repeat family 148 197 IPR002885 -
Gma15g01868 217 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 217 IPR002885 -
Gma15g01868 217 Gene3D Tetratricopeptide repeat domain 142 214 IPR011990 GO:0005515
Gma15g01868 217 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Gma15g01868 217 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 69 217 - -
Gma15g01868 217 Gene3D Tetratricopeptide repeat domain 1 141 IPR011990 GO:0005515
Gma15g01868 217 PANTHER OS05G0275100 PROTEIN 69 217 - -
Gma15g01868 217 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01868 Gma-Chr15 23588495 23589148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01868 78 217 Glycosyltransferase AT1G05670 38.571 1.30e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01868 - K17964 gmx:102659832 429.098