Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01487 ATGGCAGCACCATTGGCATGTCTTGTTGGGAGTGGTTTATCTATACAGAGTAATAAATTAACTCTTGGCAAGGACGTCAATGGAAGATATCTCTTCTCATATCATAGGCTTTCAGCACAGAGTAAGGAGTCAAAGACAATATGCATAAAGGCATCCTTGGATCAAAGGAAGCATGAAGGGAGAAGAGGATTTCTGAAATTGTTGAATGTGGGAGTTGGCTTACCTGTATTATTAGGAGGTGGGAAAGCGTATGCTGATGAACAAGGACCTTCCTCCTCCAGAATGTCTTATTCCAGATTTCTTGAGTATTTGGATAAGGGTAGAGTTAAAAAAGTGGATCTGTTTGAGAATGGAACCTCGGCTGTTGTGGAGGCTGTTTCTCCTGAGTTGGGTAATAGGGTGCAGCGAGTGCGTGTTCAATTTCCTGGACTTAGCCAAGAGCTCCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCCGCTCATAATGGCCAAGAAGAGACAGGTTCTCCATTAGCTAACCTGATTGGGAACCTGGCTTTTCCTCTGATTTTGATTGGAGGATTGTTCCTTCTCTCGAGACGATCATCAGGAGGGATGGGAGGTCCCGGTGGGGGCTTTCCTCTTGCTTTTGGTCAATCTAAAGCCAAGTTTCAAATGGAGCCCAATACTGGAGTGACATTTGATGATGTTGCTGGAGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAATTTCTTAAGAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATACCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGAACTGGGAAGACACTTTTAGCAAAGGCTATTGCAGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTAGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGCGATTTATTCAGGAAGGCCAAAGAGAATGCCCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGGAATTGGTGGAGGGAATGATGAAAGAGAACAGACCCTCAATCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGGGTTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAGGTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTTCATGGTAGCAATAAAAAGTTTGAAGCTGATGTTTCACTTGAGGTAATTGCTATGAGAACACCTGGTTTTAGTGGAGCAGATCTGGCAAACCTGCTGAACGAAGCTGCTATATTAGCTGGTCGTCGTGGAAAGACAGCAATTTCTTCCAAAGAGATTGATGATTCCATTGATAGGATTGTGGCTGGAATGGAAGGAACCGTAATGACAGATGGAAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGCGGAACTTTGACTCCTGGTCATGATCCTGTACAAAAAGTAACCTTAGTTCCTCGTGGGCAAGCTCGGGGTCTTACTTGGTTCATTCCTGCTGATGACCCAACTCTTATCTCTAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTTGGGGGCAGAGCAGCAGAGGAAGTTATTTTTGGTGAGCCTGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATAACCAGTTTGGCCAAGCAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCATGGACTCATCAGCTCAAAGTGATGTTATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATGCTGCTGTCAAGAGACTCTCAGATGAAGCATATGAAATAGCATTGAGCCAAATAAGGAGCAACCGTGAGGCAATTGACAAAATTGTGGAAGTTCTATTGGAGAAGGAGACAATGTCTGGAGATGAATTCCGAGCTCTCCTGTCCGAGTTTGTTGAAATTCCTGCTGAAAATCGGGTCCCTCCTTCAACTCCCTCACCAGTTGTTGTTTGA 2073 0.4404 MAAPLACLVGSGLSIQSNKLTLGKDVNGRYLFSYHRLSAQSKESKTICIKASLDQRKHEGRRGFLKLLNVGVGLPVLLGGGKAYADEQGPSSSRMSYSRFLEYLDKGRVKKVDLFENGTSAVVEAVSPELGNRVQRVRVQFPGLSQELLQKFREKNIDFAAHNGQEETGSPLANLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFRKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRVDILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFEADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPADDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITSLAKQMVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDAAVKRLSDEAYEIALSQIRSNREAIDKIVEVLLEKETMSGDEFRALLSEFVEIPAENRVPPSTPSPVVV 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01487 690 Pfam ATPase family associated with various cellular activities (AAA) 265 396 IPR003959 GO:0005524|GO:0016887
Gma15g01487 690 CDD AAA 240 397 - -
Gma15g01487 690 Gene3D - 216 398 IPR027417 -
Gma15g01487 690 PANTHER METALLOPROTEASE M41 FTSH 4 680 - -
Gma15g01487 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 468 IPR027417 -
Gma15g01487 690 Gene3D - 89 169 - -
Gma15g01487 690 Pfam FtsH Extracellular 82 160 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Gma15g01487 690 Gene3D Peptidase M41 475 673 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma15g01487 690 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 4 680 - -
Gma15g01487 690 SUPERFAMILY FtsH protease domain-like 480 675 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma15g01487 690 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 29 679 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gma15g01487 690 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 176 668 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gma15g01487 690 Gene3D - 399 474 - -
Gma15g01487 690 Pfam AAA+ lid domain 420 463 IPR041569 -
Gma15g01487 690 Pfam Peptidase family M41 479 666 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma15g01487 690 ProSitePatterns AAA-protein family signature. 368 386 IPR003960 GO:0005524|GO:0016887
Gma15g01487 690 SMART AAA_5 261 400 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01487 Gma-Chr15 13551742 13555725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01487 219 668 Miscellaneous Gene Families AT5G53170 50.773 4.44e-138 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01487 K03798 - gmx:100795567 1244.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01487 15 13551742 13555725 Gma09g00477 09 4697945 4701507 GST