Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01467 ATGCATTCCTTTCTTAGCCTTACCCAACCGCCACTCCCTTATCCTTCTTCCCTCCAAACCCATCCCCTAACTCTCACTCTCCCCACTCCTCCTCCGACCACCGTAGAACGCCGTTCTCCGTCGCAATGGATCGACCTCCTCCGCTCCCAAACCCACTCCTCCTCCTTCCGCGACGCCATCTCCACCTACGCCGCCATGCTCGCCGCCCCCGCACCCCCCGACAACTTCGCCTTCCCCGCCGTCCTCAAGGCCGCCGCCGCCGTCCACGATCTCTGCTTGGGAAAACAAATCCACGCGCACGTCTTCAAGTTCGGCCACGCGCCACCCTCCTCCGTCGCCGTGGCCAACTCCCTCGTCAACATGTACGGCAAGTGCGGTGACCTAACCGCCGCGCGCCAAGTGTTCGACGATATCCCGGACCGCGACCACGTGTCGTGGAACTCCATGATCGCGACGCTGTGTCGCTTCGAGGAGTGGGAACTGTCACTACATTTGTTCCGGTTAATGCTGTCGGAAAATGTGGACCCCACTTCGTTCACGCTGGTCAGCGTGGCACATGCGTGCTCGCACGTGCGTGGTGGGGTGCGGCTCGGGAAGCAAGTGCATGCTTATACTCTGAGGAATGGCGATTTGAGAACTTACACGAACAATGCGTTGGTAACGATGTATGCGAGATTGGGCAGAGTTAATGATGCTAAGGCATTGTTTGGTGTTTTTGATGGTAAAGACTTGGTGTCATGGAACACTGTTATTAGTTCGCTTTCTCAGAATGATAGGTTTGAGGAAGCGTTGATGTATGTGTACCTTATGATTGTTGATGGGGTTAGGCCGGATGGGGTTACATTGGCGAGTGTTTTGCCGGCTTGTTCGCAACTTGAGAGGTTGAGAATTGGGAGGGAAATTCATTGCTATGCGTTGAGGAATGGGGATTTGATTGAGAATTCATTTGTTGGGACTGCATTGGTTGACATGTATTGTAATTGCAAGCAGCCTAAGAAGGGTAGGTTGGTGTTTGACGGGGTGGTGAGGAGGACGGTGGCGGTTTGGAATGCTTTGCTTGCTGGTTATGCAAGGAATGAGTTTGATGATCAAGCATTAAGGTTGTTTGTTGAGATGATTTCTGAGTCTGAGTTTTGTCCCAATGCTACCACTTTTGCGAGTGTTTTGCCTGCTTGTGTGCGTTGCAAGGTGTTTTCGGACAAAGAAGGGATCCATGGTTACATAGTGAAGAGGGGATTTGGGAAGGATAAGTATGTGCAGAATGCACTGATGGATATGTATTCGAGGATGGGAAGGGTTGAAATTTCAAAGACGATATTTGGTAGGATGAATAAAAGAGATATAGTGTCTTGGAACACGATGATCACTGGCTGCATTGTTTGTGGGCGATATGATGATGCGCTTAATCTTCTGCATGAGATGCAGAGAAGGCAAGGAGAAGATGGGAGTGATACATTTGTTGATTATGAGGATGATGGGGGAGTTCCATTCAagccgaattcagtgaccctaatgacggtgcttcctggttgtgctgccttggcagcattggGGAAATCATTCTTAGAGATGTTAGAAGGTTCCATCATTTCGCAAATGGAACTTGCTCTTGTGGGGATTATTGAATCTCCCAGTTCTGTTACTCTACAATTTCTTACGAGGCTTATGCAGTACATTAACGCGTTAGTCATCAATGGAGGTGTTGACATGGTCAAGGATCTTGCGAAATTTGATGGCATTGACGATGGTGACGATGCACTAAAAGTTCTTCACAATGTTTATGGCTACGTGATGAATGAGACATTTGTAGAGTGGAGGCACAACAACGGAACTCAAGCTTGA 1842 0.4772 MHSFLSLTQPPLPYPSSLQTHPLTLTLPTPPPTTVERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKSFLEMLEGSIISQMELALVGIIESPSSVTLQFLTRLMQYINALVINGGVDMVKDLAKFDGIDDGDDALKVLHNVYGYVMNETFVEWRHNNGTQA 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01467 613 Gene3D Tetratricopeptide repeat domain 85 196 IPR011990 GO:0005515
Gma15g01467 613 Gene3D Tetratricopeptide repeat domain 301 405 IPR011990 GO:0005515
Gma15g01467 613 Gene3D Tetratricopeptide repeat domain 406 527 IPR011990 GO:0005515
Gma15g01467 613 Gene3D Tetratricopeptide repeat domain 197 300 IPR011990 GO:0005515
Gma15g01467 613 MobiDBLite consensus disorder prediction 13 37 - -
Gma15g01467 613 Pfam PPR repeat 421 447 IPR002885 -
Gma15g01467 613 Pfam PPR repeat 116 141 IPR002885 -
Gma15g01467 613 Pfam PPR repeat 348 375 IPR002885 -
Gma15g01467 613 Pfam PPR repeat 449 477 IPR002885 -
Gma15g01467 613 Pfam PPR repeat 144 174 IPR002885 -
Gma15g01467 613 Pfam PPR repeat 217 237 IPR002885 -
Gma15g01467 613 Pfam PPR repeat 245 275 IPR002885 -
Gma15g01467 613 PANTHER OS07G0578800 PROTEIN-RELATED 340 519 IPR045215 GO:0003723|GO:0009451
Gma15g01467 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 477 IPR002885 -
Gma15g01467 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Gma15g01467 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Gma15g01467 613 PANTHER OS04G0118700 PROTEIN 340 519 - -
Gma15g01467 613 TIGRFAM PPR: pentatricopeptide repeat domain 449 477 IPR002885 -
Gma15g01467 613 TIGRFAM PPR: pentatricopeptide repeat domain 144 177 IPR002885 -
Gma15g01467 613 TIGRFAM PPR: pentatricopeptide repeat domain 348 382 IPR002885 -
Gma15g01467 613 TIGRFAM PPR: pentatricopeptide repeat domain 245 278 IPR002885 -
Gma15g01467 613 TIGRFAM PPR: pentatricopeptide repeat domain 116 143 IPR002885 -
Gma15g01467 613 PANTHER OS04G0118700 PROTEIN 36 238 - -
Gma15g01467 613 PANTHER OS04G0118700 PROTEIN 235 346 - -
Gma15g01467 613 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 380 IPR002885 -
Gma15g01467 613 PANTHER OS07G0578800 PROTEIN-RELATED 36 238 IPR045215 GO:0003723|GO:0009451
Gma15g01467 613 PANTHER OS07G0578800 PROTEIN-RELATED 235 346 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01467 Gma-Chr15 13300194 13303689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01467 37 512 Glycoside Hydrolase AT3G49170 27.801 5.73e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01467 - - gmx:102670454 1003.05