Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma14g01488 ATGCACACTTTGCTTTCAGAAGCCCTTACTCACCCCCCACTCCTCTCTCACCCACCCCGAACTCGCTCTTCCTCCAACCGAGCAAGCCTCTCCCTTCTTCCCTCAAACCTAAACCCTCACTTGACCCTCCTTTACCACGAGCCACCGAGTTCCACCACCTATGCTTCCATTTTGGACTCTTGTGGGTCCCCCATTTTGGGAAAACAGCTTCACGCCCACTCTATAAAATCAGGGTTTAATGCCCACGAGTTTGTTACAACCAAGTTGCTCCAAATGTATGCTAGAAACTGCTCTTTCGAGAACGCATGTCACGTGTTCGACACAATGCCTCTTCGAAACTTACACTCTTGGACCGCACTCCTGCGCGTTTACATTGAAATGGGGTTCTTTGAGGAAGCGTTTTTTCTTTTCGAGCAGTTGTTATACGAAGGGGTGCGGGTAAGATTGGATTTTTTCGTATTCCCGGTGGTGCTGAAGATTTGTTGTGGGCTATGTGCTGTGGAACTGGGTAGGCAAATGCATGGGATGGCGTTGAAACATGAGTTTGTCAAGAATGTTTACGTAGGCAATGCTTTGATAGATATGTATGGTAAATGTGGGAGCTTAGATGAGGCCAAGAAAGTTCTAGAAGGAATGCCCCAAAAGGATTGTGTCTCTTGGAATTCTTTGATCACTGCTTGTGTTGCTAATGGGTCTGTATACGAGGCATTGGGTCTCTTGCAAAATATGTCTGCGGGTGAGTGTGGTTTAGCACCCAATCTTGTTTCCTGGACTGTGGTGATTGGCGGATTCACACAAAACGGTTACTATGTTGAGTCGGTTAAACTGCTTGCAAGAATGGTGGTAGAAGCAGGGATGAGACCGAATGCTCAAACACTGGTGAGTGTTCTTCTGGCTTGTGCGAGAATGCAATGGCTACACCTTGGGAAGGAACTGCATGGCTATGTTGTTAGACAAGAGTTCTTCTCTAATGTTTTTGTTGTGAATGGGTTAGTGGATATGTATAGAAGGAGTGGTGATATGAAAAGTGCCTTCGAAATGTTTTCCAGGTTTTCAAGGAAATCTGCAGCATCTTACAATGCAATGATAGCTGGTTATTGGGAAAATGGCAATTTGTTTAAGGCCAAGGAGTTGTTTGATCGGATGGAGCAAGAAGGTGTTCAGAAGGACAGAATATCATGGAATTCTATGATATCAGGGTATGTGGACGGTTCTCTGTTTGATGAAGCTTATAGCTTATTTAGAGATTTGCTGAAGGAAGGAATTGAACCTGATTCTTTTACTCTTGGAAGTGTCCTTGCTGGCTGTGCTGATATGGCTTCTATTCGACGTGGGAAAGAGGCACATTCCCTTGCCATTGTCAGAGGTCTGCAGTCCAACAGTATTGTGGGTGGAGCTTTGGTAGAAATGTATTCTAAATGCCAGGACATAGTGGCTGCTCAAATGGCATTTGATGGAGTAAGTGAAAGAGATCTTCCAACTTGGAATGCTTTGATATCGGGCTATGCCCGCTGTAATCAAGCTGAAAAGATTAGAGAACTTCACCAGAAAATGAGAAGGGATGGTTTTGAACCAAATGTGTATACATGGAATGGTATTATAGCTGGCTATGTGGAAAATAAACAGTATGATTCAGCAATGCAATTGTTCACTGAAATGCAGATTGCAAATTTGAGGCCTGACATATACACAGTTGGAATAATTTTAGCCGCATGCTCTAGGTTGGCTACAATTCAACGAGGAAAGCAGGTCCATGCATATTCCATAAGAGCTGGGCACGACTCAGATGTTCACATTGGAGCTGCCCTAGTGGACATGTATGCAAAATGTGGGGATGTTAAGCATTGTTATCGCGTGTATAACATGATATCAAACCCTAATTTGGTGTCCCACAATGCTATGCTCACTGCATATGCCATGCATGGGCATGGGGAAGAAGGAATTGCTCTTTTCCGCAGAATGTTGGCCAGCAAAGTAAGACCAGACCATGTGACTTTTCTAGCTGTTCTTTCTTCATGTGTACACGCTGGATCATTGGAGATTGGTCATGAATGCCTTGCTTTGATGGTAGCTTACAATGTGATGCCCTCATTGAAGCATTATACATGTATGGTCGACCTCTTAAGTCGTGCAGGCCAGCTCTACGAAGCATATGAACTTATCAAGAACCTTCCAACGGAAGCTGATGCAGTGACCTGGAATGCTCTGCTTGGTGGTTGCTTTATTCACAATGAAGTTGACTTGGGAGAAATAGCAGCAGAAAAACTCATTGAATTGGAGCCAAATAATCCTGGAAACTATGTTATGCTAGCAAACTTGTATGCTTCTGCTGGGAAGTGGCATTATCTTACTCAAACTAGACAATTAATGAAAGATATGGGAATGCAGAAGCGTCCAGGGTGCAGTTGGATAGAAGATAGAGATGGAATTCATGTGTTCGTTGCTAGTGACAAGACTCACAAAAGAATAGATGATATATATTCTATTCTGAACAATTTAACTAATTTAATTAGAATAAAGCATATGAATCATTTATAA 2538 0.431 MHTLLSEALTHPPLLSHPPRTRSSSNRASLSLLPSNLNPHLTLLYHEPPSSTTYASILDSCGSPILGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALKHEFVKNVYVGNALIDMYGKCGSLDEAKKVLEGMPQKDCVSWNSLITACVANGSVYEALGLLQNMSAGECGLAPNLVSWTVVIGGFTQNGYYVESVKLLARMVVEAGMRPNAQTLVSVLLACARMQWLHLGKELHGYVVRQEFFSNVFVVNGLVDMYRRSGDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAMQLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFLAVLSSCVHAGSLEIGHECLALMVAYNVMPSLKHYTCMVDLLSRAGQLYEAYELIKNLPTEADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQTRQLMKDMGMQKRPGCSWIEDRDGIHVFVASDKTHKRIDDIYSILNNLTNLIRIKHMNHL 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma14g01488 845 Gene3D Tetratricopeptide repeat domain 165 268 IPR011990 GO:0005515
Gma14g01488 845 Gene3D Tetratricopeptide repeat domain 309 453 IPR011990 GO:0005515
Gma14g01488 845 TIGRFAM PPR: pentatricopeptide repeat domain 190 218 IPR002885 -
Gma14g01488 845 TIGRFAM PPR: pentatricopeptide repeat domain 255 290 IPR002885 -
Gma14g01488 845 TIGRFAM PPR: pentatricopeptide repeat domain 392 426 IPR002885 -
Gma14g01488 845 TIGRFAM PPR: pentatricopeptide repeat domain 528 562 IPR002885 -
Gma14g01488 845 TIGRFAM PPR: pentatricopeptide repeat domain 358 388 IPR002885 -
Gma14g01488 845 TIGRFAM PPR: pentatricopeptide repeat domain 494 527 IPR002885 -
Gma14g01488 845 TIGRFAM PPR: pentatricopeptide repeat domain 218 246 IPR002885 -
Gma14g01488 845 TIGRFAM PPR: pentatricopeptide repeat domain 629 662 IPR002885 -
Gma14g01488 845 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 631 834 - -
Gma14g01488 845 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 498 633 - -
Gma14g01488 845 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 398 498 - -
Gma14g01488 845 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 401 - -
Gma14g01488 845 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 498 633 - -
Gma14g01488 845 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 29 401 - -
Gma14g01488 845 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 398 498 - -
Gma14g01488 845 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 631 834 - -
Gma14g01488 845 Pfam PPR repeat family 390 437 IPR002885 -
Gma14g01488 845 Pfam PPR repeat family 525 573 IPR002885 -
Gma14g01488 845 Pfam PPR repeat family 626 674 IPR002885 -
Gma14g01488 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Gma14g01488 845 Pfam PPR repeat 700 722 IPR002885 -
Gma14g01488 845 Pfam PPR repeat 328 352 IPR002885 -
Gma14g01488 845 Pfam PPR repeat 255 281 IPR002885 -
Gma14g01488 845 Pfam PPR repeat 358 387 IPR002885 -
Gma14g01488 845 Pfam PPR repeat 494 523 IPR002885 -
Gma14g01488 845 Pfam PPR repeat 116 145 IPR002885 -
Gma14g01488 845 Pfam PPR repeat 218 243 IPR002885 -
Gma14g01488 845 Pfam PPR repeat 190 217 IPR002885 -
Gma14g01488 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Gma14g01488 845 MobiDBLite consensus disorder prediction 9 29 - -
Gma14g01488 845 Gene3D Tetratricopeptide repeat domain 625 822 IPR011990 GO:0005515
Gma14g01488 845 Gene3D Tetratricopeptide repeat domain 465 624 IPR011990 GO:0005515
Gma14g01488 845 Gene3D Tetratricopeptide repeat domain 44 162 IPR011990 GO:0005515
Gma14g01488 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Gma14g01488 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Gma14g01488 845 Pfam E motif 743 805 IPR046848 -
Gma14g01488 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 288 IPR002885 -
Gma14g01488 845 SUPERFAMILY TPR-like 100 781 IPR011990 GO:0005515
Gma14g01488 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Gma14g01488 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Gma14g01488 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma14g01488 Gma-Chr14 32332904 32335441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma14g01488 48 838 Glycoside Hydrolase AT3G49170 29.800 3.27e-117 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma14g01488 - - gmx:106795994 1677.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma14g01488 14 32332904 32335441 Gma14g01488 14 32332904 32335441 ECH