Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03114 ATGTTTCCTTTCGGGCAAAAGGGTCAAAAGATAAAGGGGACTATGGTGGTTATGCAGAAGAATGTGTTGGATATCAACAGCATCACCAGTGTTGGAGGGATCGTTGACCAAGGCTTAGGCTTCATAGGCAGTGCAGTCGATGCACTTACTTTTGCAGCCACCAAAATCTCCATCCAGTTGATTAGTGCTACCAAGGCTGATGGTGGGAAAGGAAAAATTGGAAAGAGTACAAATTTAAGAGGAAAGATAACATTACCAACCTTGGGAGCTGGCGAACAAGCATACGATGTTAATTTTGAATGGGACAGTGACTTCGGAATTCCCGGTGCATTTTATATTAAGAACTTCATGCAAAATGAGTTCTACCTCAAGTCTCTAATTCTCGAAGACATTCCAAACCACGGAACCATTCACTTCGTATGCAACTCCTGGGTTTACAATTCAAAAAACTACAAGACTGATCGCATTTTCTTTGCCAACAATACATATCTTCCAAGCGAGACACCAGCTCCACTTTTGAAGTACAGAGAAGAAGAATTGAAGAATGTAAGAGGGGATGGAACTGGAGAGCGCAAGGAATGGGATAGGATCTATGATTATGATGTTTACAATGACTTGGGCAACCCGGATAGCGGTGATAAATATGCACGCCCCGTTCTTGGTGGTTCAGCCTTACCTTACCCTCGCAGAGGAAGAACCGGAAGAGGAAAAACTAGAAAAGATCCCAACAGTGAGAAGCCGAGCGATTTTGTTTACCTTCCAAGAGATGAAGCATTTGGTCACTTGAAGTCATCAGATTTTCTCGCTTATGGAATCAAATCTGTATCCCAAGATGTCTTGCCTGTCTTGACTGATGCATTCGATGGAAATATTTTGAGCCTTGAGTTTGATAATTTTGCTGAAGTGCACAAACTCTATGAAGGTGGAGTTACACTACCTACAAACTTTCTTAGCAAGATCGCCCCTATACCAGTGATCAAGGAAATTTTTCGAACTGATGGCGAACAGTTCCTCAAGTATCCACCACCTAAAGTGATGCAGGTGGATAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAACGATTGCTGGTTTAAATCCAAATGTCATTAAGATTATAGAGGAGTTCCCACTAAGTAGCAAGCTAGATACTCAAGCCTATGGTGATCATACCTGTATAATAGCAAAAGAACATTTGGAGCCTAACTTAGGTGGGCTCACTGTTGAGCAGgctatccaaaacaagaagttgttcatcttagatcaccatgactatctcattccttatttgaggaaaataaatgcaaataccacaaagacttatgctacaagaaccatatttttcttgaaagatgatggaactttgacaccattggccattgagttaagtaagccacatcctcagggtgaagaatatggtcctgttagcgaagtctacgtgcctgccagcgaaggagtggaagcttatatttggttactggcaaaggcttatgttgttgtgaatgatgcatgctaccatcaaatcattagccattggctaagcactcatgcaattgttgagccatttgtcatagcaacaaacaggcaactgagtgtggttcaccctatttacaaacttctgtttcctcactaccgtgacaccatgaatattaattcacttgcccggaaagccctggtcaatgcagatggtattatagagaaaacattcttgtggggtaggtactctatggaaatgtccgctgtcatttacaaggactgggttttcactgatcaagcattacctaatgatcttgtaaagagAGGAGTTGCTGTTAAGGACCCATCTGCTCCCCATGGAGTTCGTCTTTTGATTGAGGACTATCCTTATGCTTCTGATGGGCTAGAGATATGGGATGCCATCAAGTCCTGGGTGCAAGAATATGTCTCATTCTACTACAAGTCAGATGAGGAACTCCAAAAAGACCCTGAACTCCAAGCTTGGTGGAAAGAACTTGTAGAGGTGGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCAAAAGATGCAAACTCGTGAAGAGTTGGTTGAAGCTTCCGCTATCCTCATATGGATTGCTTCAGCCCTTCATGCTGCTGTTAACTTTGGACAGTATCCATATGGAGGTTTAATCCTAAACAGGCCAACTATTAGCAGGAGATTCATGCCTGAAAAGGGGTCTCCTGAATATGATGCGTTGGCTAAGAACCCTGAGAAGGAGTttttgaagactattactggcaagaaggagaccctcattgaccttacagttatagaaatcttgtcaaggcacgcatctgatgagttctaccttgggcagagagatggtggtgactactggacttctgatgccggtccattagaggcatttaagaggtttggaaagaagcttgaagagattgaaaagaagcttatagagaagaacaaagatgagacattgagaaaccgctatgggccagctaaaatgccttacactctgctctatccttctagtgaggagggattgactttcagaggaattcccaacagtatctctatctaa 2562 0.2802 MFPFGQKGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALTFAATKISIQLISATKADGGKGKIGKSTNLRGKITLPTLGAGEQAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLILEDIPNHGTIHFVCNSWVYNSKNYKTDRIFFANNTYLPSETPAPLLKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGNPDSGDKYARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGIKSVSQDVLPVLTDAFDGNILSLEFDNFAEVHKLYEGGVTLPTNFLSKIAPIPVIKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIIAKEHLEPNLGGLTVEQAIQNKKLFILDHHDYLIPYLRKINANTTKTYATRTIFFLKDDGTLTPLAIELSKPHPQGEEYGPVSEVYVPASEGVEAYIWLLAKAYVVVNDACYHQIISHWLSTHAIVEPFVIATNRQLSVVHPIYKLLFPHYRDTMNINSLARKALVNADGIIEKTFLWGRYSMEMSAVIYKDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVQEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSPEYDALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03114 853 Pfam PLAT/LH2 domain 64 158 IPR001024 GO:0005515
Gma13g03114 853 PRINTS Lipoxygenase signature 490 507 IPR013819 GO:0016702|GO:0046872
Gma13g03114 853 PRINTS Lipoxygenase signature 508 525 IPR013819 GO:0016702|GO:0046872
Gma13g03114 853 PRINTS Lipoxygenase signature 528 548 IPR013819 GO:0016702|GO:0046872
Gma13g03114 853 ProSitePatterns Lipoxygenases iron-binding region signature 1. 508 522 IPR020833 GO:0016702|GO:0046872
Gma13g03114 853 SMART LH2_4 9 160 IPR001024 GO:0005515
Gma13g03114 853 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 6 853 - -
Gma13g03114 853 Pfam Lipoxygenase 172 836 IPR013819 GO:0016702|GO:0046872
Gma13g03114 853 Gene3D - 164 262 - -
Gma13g03114 853 Gene3D - 263 351 IPR027433 -
Gma13g03114 853 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 162 853 IPR013819 GO:0016702|GO:0046872
Gma13g03114 853 PANTHER LIPOXYGENASE 6 853 IPR000907 GO:0016702|GO:0046872
Gma13g03114 853 Gene3D - 352 485 - -
Gma13g03114 853 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 163 IPR036392 GO:0005515
Gma13g03114 853 ProSitePatterns Lipoxygenases iron-binding region signature 2. 535 545 IPR020834 GO:0016702|GO:0046872
Gma13g03114 853 ProSiteProfiles PLAT domain profile. 34 159 IPR001024 GO:0005515
Gma13g03114 853 PRINTS Plant lipoxygenase signature 129 147 IPR001246 GO:0016491
Gma13g03114 853 PRINTS Plant lipoxygenase signature 155 176 IPR001246 GO:0016491
Gma13g03114 853 PRINTS Plant lipoxygenase signature 194 210 IPR001246 GO:0016491
Gma13g03114 853 PRINTS Plant lipoxygenase signature 226 245 IPR001246 GO:0016491
Gma13g03114 853 PRINTS Plant lipoxygenase signature 293 314 IPR001246 GO:0016491
Gma13g03114 853 PRINTS Plant lipoxygenase signature 338 354 IPR001246 GO:0016491
Gma13g03114 853 PRINTS Plant lipoxygenase signature 377 396 IPR001246 GO:0016491
Gma13g03114 853 PRINTS Plant lipoxygenase signature 443 467 IPR001246 GO:0016491
Gma13g03114 853 PRINTS Plant lipoxygenase signature 765 779 IPR001246 GO:0016491
Gma13g03114 853 SUPERFAMILY Lipoxigenase 164 853 IPR036226 -
Gma13g03114 853 CDD PLAT_LH2 10 160 IPR042057 -
Gma13g03114 853 Gene3D PLAT/LH2 domain 1 163 - -
Gma13g03114 853 MobiDBLite consensus disorder prediction 213 249 - -
Gma13g03114 853 Gene3D - 486 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03114 Gma-Chr13 45323152 45330008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03114 9 853 Acyl Lipid Metabolism Gene Families AT1G55020 58.188 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03114 K15718 - gmx:547836 1710.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03114 13 45323152 45330008 Gma07g00062 07 497886 503887 PCT