Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03112 ATGTTTTCAGTTCCAGGGGTGTCGGGAATCCTGAACAGAGGAGGAGGGCATAAGATAAAAGGGACAGTGGTGTTGATGAGGAAGAATGTGTTGGACTTCAACAGCGTGGCTGATCTTACTAAAGGAAATGTTGGGGGACTCATAGGCACCGGCCTCAACGTTGTTGGCTCAACACTTGATAACCTCACTGCTTTCTTGGGCCGAAGTGTCGCCCTACAGCTCATTAGTGCTACCAAACCTCTTGCAAATGGAAAAGGAAAAGTTGGAAAGGATACGTTCTTGGAAGGGATTATTGTGTCGTTACCAACTTTGGGAGCAGGGGAGTCTGCATTCAATATTCAGTTTGAATGGGACGAAAGCATGGGAATCCCCGGTGCGTTTTACATAAAGAACTACATGCAAGTTGAGTTTTACCTCAAGAGTTTGACTCTTGAAGACGTTCCAAACCAAGGAACCATTCGCTTTGTTTGCAACTCATGGGTTTATAACACTAAACTTTACAAAAGCGTGCGCATTTTCtttgccaaccatACATATGTTCCAAGTGAGACACCAGCAGCACTTGTGGGGTACAGAGAAGAAGAATTGAAGAATTTAAGAGGAGATGGAAAAGGAGAGCGCAAAGAACATGATAGGATCTATGATTATGATGTCTACAATGATTTGGGCAATCCAGATCACGGTGAAAATTTTGCTCGCCCAATTCTTGGAGGGTCTAGCACTCATCCCTACCCTCGTAGGGGAAGAACTGGTCGATATCCAACAAGGAAAGATCAGAATTCTGAGAAGCCAGGCGAAGTTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCCTCGGATTTTCTTGCATATGGAATAAAATCTTTATCTCAATATGTCTTACCGGCGTTCGAATCTGTTTTCGATTTGAACTTCACGCCAAATGAGTTTGATAGCTTCCAAGATGTGCGTGACCTCCACGAAGGTGGAATTAAGCTTCCTACAGAAGTAATTAGCACAATTATGCCCTTACCGGTGGTCAAAGAACTCTTTCGTACAGATGGTGAACAAGTCCTCAAGTTTCCACCACCTCATGTCATTCAAGTGAGTAAGTCTGCATGGATGACCGATGAAGAATTTGCAAGAGAGATGGTTGCGGGTGTAAATCCATGCGTAATTCGTGGTCTTCAAGACTTTCCTCCAAAAAGCAATCTGGATCCTACAATCTATGGTGAGCAAACCAGTAAGATAACAGCAGATGCCCTTGATCTAGATGGATACACAGTGGACGAGgcactagcaagtcggaggttatttatgttagattaccatgatgtattcatgccatatataaggcggataaatcagacatatgccaaggcttatgcgacaaggactatcctttttctgagagaaaatggaaccttaaagccagtggccatcgaattaagtttgccacatcctgctggggacctgtcaggtgctgtcagtcaagtcatcttacctgcaaaagaaggtgttgaaagtacaatttggctactggccaaagcttatgtggtcgtaaatgactcttgctatcatcaactcatgagccattggttaaatactcatgcggtgattgagccattcatcatagcaacaaaccgacaccttagtgctcttcacccaatttataagcttctaactcctcactaccgtgacaccatgaacatcaacgcacttgctaggcaatctctcattaatgctgatggcataatagagaaatcttttttgccctcaaagcattccgttgagatgtcttcagcggtttataagaattgggttttcactgatcaagcactacctgcagatcttatcaagagAGGAGTGGCAATTAAGGATCCATCTGCCCCACATGGACTTCGACTTCTGATAGAGGACTACCCTTATGCTGTTGATGGGCTAGAGATATGGGCTGCAATTAAGACATGGGTCCAAGAATATGTGTCCTTGTACTATGCAAGAGATGATGATGTCAAACCTGATTCTGAACTCCAACAGTGGTGGAAAGAAGCTGTAGAGAAAGGTCATGGTGATCTGAAAGACAAGCCATGGTGGCCTAAGTTGCAAACAATTGAAGAGCTTGTTGAAATTTGCACCATTATCATATGGACTGCTTCAGCCCTCCATGCAGCCGTTAACTTTGGTCAATATCCATATGGAGGTTTCATTCTGAATCGCCCAACTTCTTCTAGAAGGTTGCTTCCTGAGAAAGGCACCCCAGAATATGAAGAAATGGTGAAAAGTCATCAAAAGGCTTATTTGAGAACTATTACATCAAAGTTTCAAACTCTAGTTGACCTTTCAGTGATAGAGATCTTGTCAAGGCATGCTTCTGATGAGGTCTACCTTGGCCAAAGGGACAACCCACATTGGACCTCTGACTCAAAAGCATTACAAGCCTTTCAAAAATTTGGAAACAAGCTCAAAGAAATTGAGGAAAAACTTGCAAGGAAGAACAATGATCAAAGTCTCTCCAATCGACTTGGGCCGGTTCAACTGCCATACACTTTGCTCCATCCTAACAGTGAGGAAGGGTTGACTTGCAGGGGGATTCCTAATAGCATCTCTATCTAA 2601 0.3364 MFSVPGVSGILNRGGGHKIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRSVALQLISATKPLANGKGKVGKDTFLEGIIVSLPTLGAGESAFNIQFEWDESMGIPGAFYIKNYMQVEFYLKSLTLEDVPNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAALVGYREEELKNLRGDGKGERKEHDRIYDYDVYNDLGNPDHGENFARPILGGSSTHPYPRRGRTGRYPTRKDQNSEKPGEVYVPRDENFGHLKSSDFLAYGIKSLSQYVLPAFESVFDLNFTPNEFDSFQDVRDLHEGGIKLPTEVISTIMPLPVVKELFRTDGEQVLKFPPPHVIQVSKSAWMTDEEFAREMVAGVNPCVIRGLQDFPPKSNLDPTIYGEQTSKITADALDLDGYTVDEALASRRLFMLDYHDVFMPYIRRINQTYAKAYATRTILFLRENGTLKPVAIELSLPHPAGDLSGAVSQVILPAKEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFIIATNRHLSALHPIYKLLTPHYRDTMNINALARQSLINADGIIEKSFLPSKHSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSAPHGLRLLIEDYPYAVDGLEIWAAIKTWVQEYVSLYYARDDDVKPDSELQQWWKEAVEKGHGDLKDKPWWPKLQTIEELVEICTIIIWTASALHAAVNFGQYPYGGFILNRPTSSRRLLPEKGTPEYEEMVKSHQKAYLRTITSKFQTLVDLSVIEILSRHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNSEEGLTCRGIPNSISI 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03112 866 ProSitePatterns Lipoxygenases iron-binding region signature 1. 522 536 IPR020833 GO:0016702|GO:0046872
Gma13g03112 866 Gene3D - 500 865 - -
Gma13g03112 866 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 16 179 IPR036392 GO:0005515
Gma13g03112 866 ProSiteProfiles PLAT domain profile. 50 175 IPR001024 GO:0005515
Gma13g03112 866 SMART LH2_4 17 176 IPR001024 GO:0005515
Gma13g03112 866 SUPERFAMILY Lipoxigenase 181 866 IPR036226 -
Gma13g03112 866 MobiDBLite consensus disorder prediction 251 265 - -
Gma13g03112 866 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 1 866 - -
Gma13g03112 866 PRINTS Lipoxygenase signature 504 521 IPR013819 GO:0016702|GO:0046872
Gma13g03112 866 PRINTS Lipoxygenase signature 522 539 IPR013819 GO:0016702|GO:0046872
Gma13g03112 866 PRINTS Lipoxygenase signature 542 562 IPR013819 GO:0016702|GO:0046872
Gma13g03112 866 Gene3D - 180 278 - -
Gma13g03112 866 PANTHER LIPOXYGENASE 1 866 IPR000907 GO:0016702|GO:0046872
Gma13g03112 866 PRINTS Plant lipoxygenase signature 145 163 IPR001246 GO:0016491
Gma13g03112 866 PRINTS Plant lipoxygenase signature 171 192 IPR001246 GO:0016491
Gma13g03112 866 PRINTS Plant lipoxygenase signature 210 226 IPR001246 GO:0016491
Gma13g03112 866 PRINTS Plant lipoxygenase signature 243 262 IPR001246 GO:0016491
Gma13g03112 866 PRINTS Plant lipoxygenase signature 309 330 IPR001246 GO:0016491
Gma13g03112 866 PRINTS Plant lipoxygenase signature 354 370 IPR001246 GO:0016491
Gma13g03112 866 PRINTS Plant lipoxygenase signature 393 412 IPR001246 GO:0016491
Gma13g03112 866 PRINTS Plant lipoxygenase signature 457 481 IPR001246 GO:0016491
Gma13g03112 866 PRINTS Plant lipoxygenase signature 779 793 IPR001246 GO:0016491
Gma13g03112 866 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 178 866 IPR013819 GO:0016702|GO:0046872
Gma13g03112 866 Gene3D - 368 499 - -
Gma13g03112 866 Coils Coil 810 830 - -
Gma13g03112 866 CDD PLAT_LH2 17 176 IPR042057 -
Gma13g03112 866 Pfam Lipoxygenase 188 849 IPR013819 GO:0016702|GO:0046872
Gma13g03112 866 Gene3D PLAT/LH2 domain 8 179 - -
Gma13g03112 866 Gene3D - 279 367 IPR027433 -
Gma13g03112 866 MobiDBLite consensus disorder prediction 235 265 - -
Gma13g03112 866 Pfam PLAT/LH2 domain 80 174 IPR001024 GO:0005515
Gma13g03112 866 ProSitePatterns Lipoxygenases iron-binding region signature 2. 549 559 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03112 Gma-Chr13 45311412 45315621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03112 14 866 Acyl Lipid Metabolism Gene Families AT1G55020 57.388 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03112 K15718 - gmx:547774 1746.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03112 13 45311412 45315621 Gma15g00252 15 2200951 2206319 GST
Gma13g03112 13 45311412 45315621 Gma07g00326 07 2810283 2816375 PCT
Gma07g00326 07 2810283 2816375 Gma13g03112 13 45311412 45315621 PCT