Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02561 ATGGCTCAGTTATTGTCACCAGTATGCATGGAGGCTCTGAAAATCCACAATCCATCATTGAATCTTTGTTCAAGAAGCTCATGGCGGATGCTGGTGAAGGGTGCAAGTCCTTGCACCTTTCTGACACACAGTGGTAGTAAGCGAAGAGGGTTTGGCAAAGTAAGAGTTACTGCTGAAGACTCAGTTTCTCCCTCTGAGACCATTGCAGATGACTATTATGAAGTTCTTGGACTGCTTCCAGATGCGACACCAGAGCAGATCAAGAAGGCATACTACAATTGCATGAAATCTTGCCACCCGGATTTGAGTGGAAATGATCCTGAGACCACAAATTTCTGCATGTTCATCAATGAAGTCTACACGGTGCTCAGCGATCCCGTCCAACGCATGATTTATGATGAAATTCATGGCTACTCTTTAACTTCAATCAATCCTTTCTTGGATGATTCAAGCCCAAGGGATCATGCCTTTGTTGATGAATTCAGCTGCATAGGCTGCAAAAATTGTGCCAATGTAGCCCCTGGTGTGTTTGCAATTGAGGAAGACTTTGGAAGAGCCAGAGCATACAACCAATGTGGGGACCCTGAATTAGTTCAACAGGCGATTGACAGTTGCCCTGTTAGCTGCATTCATTGGACATCTTCTGCACAGCTATCATTACTGGAAGATGAGATGCGCCGTGTAGAAAGAGTCAATGTTGCCCTAATGGTATCAGGAATGGGAACAGCATCAATTGATGTTTTCAGAATGGCAAGTTCCAGATGGGAAAAGAGGCAGTCAAAAGTCTTGGCAAAAGCAAAATTGAGAATGATGAGGGAAGAAGGTTCTGATAAGAAAAATTCGTACTGGGACAATCTTTGGGGCAAACAGAAAGACTATCAAAGTTCAGATGAGGAAGTTGAAGAAAGAGCAAAAAGAGCTGCTTCAGCGGCACGAAGATGGAGGGAATACTCAAGTAGAGGTGTTGATAAGCCTCCCACATTTAAACTTCCAGAGGCAAGCCTTGGCAAGGACAAGTGA 1020 0.4422 MAQLLSPVCMEALKIHNPSLNLCSRSSWRMLVKGASPCTFLTHSGSKRRGFGKVRVTAEDSVSPSETIADDYYEVLGLLPDATPEQIKKAYYNCMKSCHPDLSGNDPETTNFCMFINEVYTVLSDPVQRMIYDEIHGYSLTSINPFLDDSSPRDHAFVDEFSCIGCKNCANVAPGVFAIEEDFGRARAYNQCGDPELVQQAIDSCPVSCIHWTSSAQLSLLEDEMRRVERVNVALMVSGMGTASIDVFRMASSRWEKRQSKVLAKAKLRMMREEGSDKKNSYWDNLWGKQKDYQSSDEEVEERAKRAASAARRWREYSSRGVDKPPTFKLPEASLGKDK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02561 339 PRINTS 3Fe-4S ferredoxin signature 158 169 IPR001080 GO:0005506|GO:0009055
Gma13g02561 339 PRINTS 3Fe-4S ferredoxin signature 169 179 IPR001080 GO:0005506|GO:0009055
Gma13g02561 339 PRINTS 3Fe-4S ferredoxin signature 198 210 IPR001080 GO:0005506|GO:0009055
Gma13g02561 339 Gene3D - 155 214 - -
Gma13g02561 339 Pfam DnaJ domain 71 133 IPR001623 -
Gma13g02561 339 ProSiteProfiles dnaJ domain profile. 71 136 IPR001623 -
Gma13g02561 339 SMART dnaj_3 70 128 IPR001623 -
Gma13g02561 339 SUPERFAMILY 4Fe-4S ferredoxins 156 212 - -
Gma13g02561 339 Gene3D DnaJ domain 55 144 IPR036869 -
Gma13g02561 339 PANTHER OS01G0730500 PROTEIN 1 339 - -
Gma13g02561 339 Pfam 4Fe-4S single cluster domain of Ferredoxin I 158 212 - -
Gma13g02561 339 MobiDBLite consensus disorder prediction 314 339 - -
Gma13g02561 339 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 154 182 IPR017896 -
Gma13g02561 339 CDD DnaJ 71 125 IPR001623 -
Gma13g02561 339 PRINTS DnaJ domain signature 73 91 IPR001623 -
Gma13g02561 339 PRINTS DnaJ domain signature 91 106 IPR001623 -
Gma13g02561 339 PRINTS DnaJ domain signature 108 128 IPR001623 -
Gma13g02561 339 SUPERFAMILY Chaperone J-domain 71 158 IPR036869 -
Gma13g02561 339 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02561 Gma-Chr13 40468343 40473010 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02561 - - gmx:100809007 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02561 13 40468343 40473010 Gma13g02561 13 40468343 40473010 ECH
Gma13g02561 13 40468343 40473010 Gma12g01999 12 40587964 40592329 GST