Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02549 ATGTGGAGAGATCCGGGAGTTTCAGCTGATTCTTTCTATGAAATCCGCCCCGAATGCACCGATGTTCCCGTTACTCGATTTAAGATCAAGGCTGGCAAAACACTAAGTGCAAGAAAATGGCATGCTGCATTTACTCCAGAAGGGTATCTAGATATAGGCAAGACTCTAAGCCGAATCTACCGCGGGGGAGTCCATCCATCAATTAAGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGATATCAGATAAGACAACGCCGAAGAATGCAATATGCTACATGGAAAGAAGAATGCCGCCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTGTCACAGCACCTGTCATTACTGAAGATGGTCAGCCTATTCAAGATCCATTGGTTTTGAAAGAAACAAGTCCGGCCAAGGGATTGGCTGTACATCCACAACATAATAATAGTCCTTCAAGTATGGATGCTGCAAATAATTTAGAAAAGGTGACAGACAAGGCAGTAGTCCAGTGGATGTTAACTCTGCATCAAATAGGTCTTGATGTGGTTCGCACTGATAGGACATTAGTTTTTTATGAGAAGCAAGAAAACTTGTCGAAACTATGGGATATTCTTGCTGTTTATGCTTGGATAGATAAGGACGTTGGCTATGGTCAAGGAATGTGTGACATATGCTCCCCAATGATAATTCTTCTTGATGACGAAGCAGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTTCGAGGCAACTTTAGATGCACCGAGAGCTCTGTTGGTGTGGCGGCTCAACTAAGTAATCTGGCTTCAGTCACTCAAGTAATTGATCCAAAACTTCATAAACATTTAGAACATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGACTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGAATTGTTCTTGATGTATGAAATGCCTCTATCAGCTTCTGAAAAAGCTGAGGGCTCAAAAGGGAAAACAAAGTCAATACGTCAATGTGGAAAGTATGAGAGAGAAATTGTGAAGAGTGGAGCAAAAAATGCAGAAGCACCTCTTCCTATGTCTATTTTCCTTGTTGCTAGTGTATTGAAAGATAAAAGTGCAAAACTACTCCAAGAAGCACGGGGCTTGGATGATGTTGTCAAGATTTTGAATGACACAACTGGTAATATAGATGCAAAAAAAGCTTGCAGTGGGGCTATGAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAAACCCTAG 1329 0.4116 MWRDPGVSADSFYEIRPECTDVPVTRFKIKAGKTLSARKWHAAFTPEGYLDIGKTLSRIYRGGVHPSIKGEVWEFLLGCYDPKSTFEERYQIRQRRRMQYATWKEECRQLFPLVGSGRFVTAPVITEDGQPIQDPLVLKETSPAKGLAVHPQHNNSPSSMDAANNLEKVTDKAVVQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMCDICSPMIILLDDEADAFWCFERLMRRLRGNFRCTESSVGVAAQLSNLASVTQVIDPKLHKHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPELFLMYEMPLSASEKAEGSKGKTKSIRQCGKYEREIVKSGAKNAEAPLPMSIFLVASVLKDKSAKLLQEARGLDDVVKILNDTTGNIDAKKACSGAMKLHKKYLKKAKKP 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02549 442 Pfam Rab-GTPase-TBC domain 152 329 IPR000195 -
Gma13g02549 442 Gene3D - 265 441 - -
Gma13g02549 442 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 442 - -
Gma13g02549 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 289 IPR035969 -
Gma13g02549 442 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 158 259 - -
Gma13g02549 442 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 442 - -
Gma13g02549 442 SMART tbc_4 60 352 IPR000195 -
Gma13g02549 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 267 435 IPR035969 -
Gma13g02549 442 ProSiteProfiles TBC/rab GAP domain profile. 63 329 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02549 Gma-Chr13 40381346 40389099 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02549 - - gmx:100805808 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02549 13 40381346 40389099 Gma13g02549 13 40381346 40389099 ECH
Gma13g02549 13 40381346 40389099 Gma12g02010 12 40694667 40702062 GST