Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02540 ATGAAGGAGATTTTGAAGCTGTTGGAAATCATAGACATAAAAAACCTTTCATCTGCTGAATCTGTAGCAAAGGTATTTCAAGCATTAGGAAGATTACTATTGGAACCTCTTGCGGAGAAGTTCCTTTTAGACTTCAAAACAAGTGATCATGAAGCAGATAATATTACAAACTTCATTGCTAGTTATGCTGTTAGCATTCCAGATTTATCGATAAGAAATATCTCACAAATGGTTGAGGATGTCATAAAAAAATTCAAAGATTTGCACCAAAGACTAGAAGTTTCACCTTCATCCTCCTCATACGAGAAGCTCATTTTACATAGCTGTGCATTGCTCGAGGTACATGTAGCGCTTGATATTGTTGATGAAATGTGTGAAGCAGGCTTGACTCTATCAACCAAGGCGTTACACTCAATTTTACAAATTTGTGATGATACATCTGAATATAATTTGGTCCATCGAATCTTCTCAACCATACGTCACTACAATTTGGAATCAGATGATGAAACATTCAGATCTATGATAGACTTTTTCTTGAAGATGAAAGATATTGAAGGTGCATATAAGATGCTTGATGATTTGGAGGAATTAAATTTGAAGCTGACCCCAGGGATGTACAATGCTATAATGGCAGAATGTTTTCAAGAGAAAAACATTAGTGATGGGGTGAGGGTTCTTGAGCACATGCAATGTGCTGATGTAAAGCCTGATTCACAGACTTTCAGCTGCCTGATCAGCAACTCCGAAACTAAAGAGGATATAGCAAAGTATTATGAAGAACTGAAGCAATCTGGAATCGTAGCTACCAAGCAAATTTTCATGGCACTTATAAATGCTTATGCTGCTTGCGGACAGTTGGAGAAAGCAAAAAAGGTAATCTTAGATCCATTGATACCACCGAAGAGCTTGAATCAAATCAAGGGTTTTCTTGTCTCAGTACTTGCATCACATGGGCAATTGTCTGGGGCTCTAGTTATTTATGACAAAATCAAACAATCTGGACACAAGCTGGAGGCAAAAGAAATTACGAGTCTCATTGAGCACACTCATTCCGAGGGTGAGTTGGATAGGTTGCTTCTGCTACTTGAGGAATTGGATGATACAGACTATTGGAATGATGCTTGCTGCAGAATCATCTTGTATTGTATTTGGAATAAGCATTTAAGTTCTGCTGTCGAATTGTGTAATCTGCTCATGGATAAGTTCCAAAGTGATGAGCAAGTTATGGAATTTCTCTTTGATAAGGTATTTTCTCTGATTGAAGAGTCAAGTCATTTGCACACTTTCCTCGAGTTGCTTTCGGAAATCAAGGATAAGCTTGGGCTTCTGCCTTCACAGAAACGTCATGATTCTCTGCTACGTGTTACTGCCACTGATTTGCATGATTCTGATTTCTGA 1398 0.3805 MKEILKLLEIIDIKNLSSAESVAKVFQALGRLLLEPLAEKFLLDFKTSDHEADNITNFIASYAVSIPDLSIRNISQMVEDVIKKFKDLHQRLEVSPSSSSYEKLILHSCALLEVHVALDIVDEMCEAGLTLSTKALHSILQICDDTSEYNLVHRIFSTIRHYNLESDDETFRSMIDFFLKMKDIEGAYKMLDDLEELNLKLTPGMYNAIMAECFQEKNISDGVRVLEHMQCADVKPDSQTFSCLISNSETKEDIAKYYEELKQSGIVATKQIFMALINAYAACGQLEKAKKVILDPLIPPKSLNQIKGFLVSVLASHGQLSGALVIYDKIKQSGHKLEAKEITSLIEHTHSEGELDRLLLLLEELDDTDYWNDACCRIILYCIWNKHLSSAVELCNLLMDKFQSDEQVMEFLFDKVFSLIEESSHLHTFLELLSEIKDKLGLLPSQKRHDSLLRVTATDLHDSDF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02540 465 PANTHER OS02G0132600 PROTEIN 2 464 - -
Gma13g02540 465 PANTHER OS02G0132600 PROTEIN 2 464 - -
Gma13g02540 465 TIGRFAM PPR: pentatricopeptide repeat domain 205 238 IPR002885 -
Gma13g02540 465 Pfam Pentacotripeptide-repeat region of PRORP 106 263 IPR033443 -
Gma13g02540 465 Gene3D Tetratricopeptide repeat domain 252 394 IPR011990 GO:0005515
Gma13g02540 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Gma13g02540 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Gma13g02540 465 Gene3D Tetratricopeptide repeat domain 74 251 IPR011990 GO:0005515
Gma13g02540 465 Pfam PPR repeat 273 293 IPR002885 -
Gma13g02540 465 Pfam PPR repeat 310 334 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02540 Gma-Chr13 40266326 40273586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02540 38 370 Glycosyltransferase AT1G05670 20.821 2.96e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02540 - - gmx:100785657 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02540 13 40266326 40273586 Gma13g02540 13 40266326 40273586 ECH