Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02427 ATGGCATGCAACATTAGAGCGAGTACGAGGCTTCACCAAGGAATCTTCCAAACGTTCTCCAACAACGTTAAAACCTCAACCCCACGGTTCGTGCATTCGTGTCCAGCCACGTTCATCCAGAACCTTCTCAAGTTCCGAAGAGACAAACCCACAGAACAGTTGTATCGAGCTCTCGACCAGTGCGGGTTCGACCTCAACCACGACCTCGTTCTCGACGTGCTGCGACGACACCGTTCCGATTGGCGACCCGCGCACGTGTTCTTCAACTGGGCCTCCAAGACCACCACCGGGTACCAGCCCAGTTCCGATGTCTGCAACGAGATCGTTGACATCCTTGGCAAAATGCAGCGCTTTCAGGAACTGCACCAAGTGCTCGACGAAATGTCCAAGAGAGAGGAACTCCTCGATGAAGCCGTGTTCGCCACCCTGGTTCGTAGGTTCGTGGGTGCTCATAAAGTGGATGAAGCAATTCAGCTATTCTACAGAAGGAAGGAGTTTGGGTTGGAGTTAAATTCGGAGGCTTTTCGCACTCTCTTGATGTGGCTGTGCAGGTACAAGCACGTGGAAGACGCAGAAGCTTTGTTTCACAATTCGGTGAAGAAGGGTTTGAGGGCTGATATAAAGATGTGGAACGTGATCCTGAATGGTTGGTGTGTTTTGGGGAACTCGCATGAGGCAAAGAGGGTGTGGAGAGACATAGTGGCTTCTCCATGCAAGCCTGATATATTTACCTATGCCACCTTCATCAAGGCATTGACCAAGAAAGGGAAACTTGGGACGGCACTGAAGTTGTTCCGTGGCATGTGGGACAAGGGTGGTAAACCGGATGTTGTGATATGCAACTGCATCATTGATGCTCTTTGTTTCAAGAAGAGGATTCCTGAGGCCTTGGAGATTTTCTGTGATATGAGTGAGCGAGGTTGTGAACCGAATGTTGCTACTTACAATTCACTTATTAAGTACATGTGCAAGATACAGCGGATGGAGAAGGTTTATGAGCTGGTGGATGAGATGGAGAGGAAGAAGGGGAGTTGCTTGCCTAATGCTGTTACATATTGTTACTTGCTCAAGAGCTTGAAGGAGCCGGGGGAGGTTTGCAGGGTTTTGGAGAGGATGGAGAGAAATGGATGTGGCATGAATGATGATGTTTATAACATGGTGTTGAGGTTGTACATGAAATGGGATGATGGGGATGGAGTTAGAAAAACATGGGAAGAAATGGAGAGGAATGGATGGGGACCAGATAGGAGATCATATACCATCATGATTCATGAAAACTTTGAGAAAGGGAGAGTAAAGGATGCCGTGCGTTATTTAGAGGAGATGATATCTAAGGGAATGGTGCCAGAGCCAAGGACGGAGAAGCTAGTAAGTTCCATGAACATTCGGTTGAAGGGGAGGTCAGAAAAACAGGAAGATGTTGAAGGGGGGACAACTAGTCTTTGA 1446 0.4813 MACNIRASTRLHQGIFQTFSNNVKTSTPRFVHSCPATFIQNLLKFRRDKPTEQLYRALDQCGFDLNHDLVLDVLRRHRSDWRPAHVFFNWASKTTTGYQPSSDVCNEIVDILGKMQRFQELHQVLDEMSKREELLDEAVFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAFRTLLMWLCRYKHVEDAEALFHNSVKKGLRADIKMWNVILNGWCVLGNSHEAKRVWRDIVASPCKPDIFTYATFIKALTKKGKLGTALKLFRGMWDKGGKPDVVICNCIIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCKIQRMEKVYELVDEMERKKGSCLPNAVTYCYLLKSLKEPGEVCRVLERMERNGCGMNDDVYNMVLRLYMKWDDGDGVRKTWEEMERNGWGPDRRSYTIMIHENFEKGRVKDAVRYLEEMISKGMVPEPRTEKLVSSMNIRLKGRSEKQEDVEGGTTSL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02427 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Gma13g02427 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Gma13g02427 481 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 481 - -
Gma13g02427 481 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 1 481 - -
Gma13g02427 481 Pfam PPR repeat 383 411 IPR002885 -
Gma13g02427 481 Pfam PPR repeat 418 446 IPR002885 -
Gma13g02427 481 Pfam PPR repeat 175 202 IPR002885 -
Gma13g02427 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 341 IPR002885 -
Gma13g02427 481 Gene3D Tetratricopeptide repeat domain 39 198 IPR011990 GO:0005515
Gma13g02427 481 Gene3D Tetratricopeptide repeat domain 270 338 IPR011990 GO:0005515
Gma13g02427 481 Gene3D Tetratricopeptide repeat domain 199 269 IPR011990 GO:0005515
Gma13g02427 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Gma13g02427 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Gma13g02427 481 Gene3D Tetratricopeptide repeat domain 339 475 IPR011990 GO:0005515
Gma13g02427 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Gma13g02427 481 TIGRFAM PPR: pentatricopeptide repeat domain 278 312 IPR002885 -
Gma13g02427 481 TIGRFAM PPR: pentatricopeptide repeat domain 383 415 IPR002885 -
Gma13g02427 481 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Gma13g02427 481 TIGRFAM PPR: pentatricopeptide repeat domain 418 449 IPR002885 -
Gma13g02427 481 TIGRFAM PPR: pentatricopeptide repeat domain 314 343 IPR002885 -
Gma13g02427 481 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Gma13g02427 481 Pfam PPR repeat family 275 324 IPR002885 -
Gma13g02427 481 Pfam PPR repeat family 206 253 IPR002885 -
Gma13g02427 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02427 Gma-Chr13 39016781 39018728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02427 97 476 Glycosyltransferase AT1G05670 25.714 1.30e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02427 - - gmx:100804908 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02427 13 39016781 39018728 Gma13g02427 13 39016781 39018728 ECH