Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02415 ATGAGAAGAACAATGTCAAAGGTATCATCAGCATGCTTCATTTTCTTTGCTTTTGTAGTTGTAGCAGCACTTCATGTTGAATGCCGTTCTCTTCGGCCTAGTGTTTCTGATGGAGTTGATGCAATTCAACCTCAAGAGTCTTATCTACAACTCAATAAAGACCAAAGGGTTGTTGTTGAGTCTTCTTCTGATGATGATGAGCATTTCTGTAAGCAAATGTACGGGTTCTTGCCATGTTCCAATAACATACTTGGCCATCTCTTCCTCATTTTGGTTTATGAGTACTTGTTGTTCCATGGAGAATCATATTTGGCTTCTGGGGGTGAGCAAATCTTCAAGATTCTTGGCCCTGGTGTTTTTGGTGCTAGTGCCTTTGATATTCTTGGTGCTCTTCCTGAGTCATTAATTCTTGTTGTTACTGGACTTTCCAGCGATAAGGAGAGTGCACAAGAGTATGCTTCCACTGGCGTTGGTTTGTTGGCTGGATCATCCATTATGCTTCTGACAGTAGTGTGGGGAACTTGTGTTATCATTGGCAAGCAAAAGTTGAAAAATGACCCTGACTCTTTTGGCACAAATTCGTCAAATGGAGGAATAAAAGAATCACTAACTGGTTATGGTATCACTATGGATGTAGAGACTAGAAAGATGGCAAGAATCATGGTTTTCTCAGTTATACCACTCCTCATAATGCAGATTCCCAATTTGTTCAACTTCTCTTCTACACCACGCAATGTGACCTTGATGGTTTCTCTTACAGTTGCTGTTGCTTTTCTTATCTCATACTTCATTTACCAGGTCTTTAAACCTCAGATAGAGAAAACAAGACTGGAGTATATTAAACATGATGACTTAATATTAAGAATTTTTCAACGTGTTGAAAAACAAACTCTGCAAAAGATCCTCACCGACGATGGGACTCCCAATGTAGCTGCAATAAGTGGGTTGTATCATGAAATTAGTCAAAGTGGGGGCAAGGATTTGTTAGCTTCTGAAGTGAAAGAGCTGTTGTTTGGGAACAAATTAAATGACACAAATATCAAAGAGGAACAAATAACTGACATGTTAAAAGTTTTTGACCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGCTTAACAGAATACATTAACCAATCAAAGCATGCTCTGGATAGACAATACCTCCCCAAAGAATCTCTCAACAAAATGTATCAGACTTTTATCAAGCCATGGATTGAACACGTGAGAAAACAACGCGAATTGAAGGGACATCTTATATCTGAAGTCTTGAAGCATGCTCAGAATGATATGGTTGGCAGGCTGCGCCAAGATGATGGCAGACCTGACAAAACTGCTATCAGAAGGTTGTTTGAGGAAATTGATGTCAACAGGGATAACCACATTTCAAGATCTGAATTGGAAAAAATAGTCAAGGACATACATTTTGGCAAGGTCGTAGAAACTGAGGAGGCAGTTACAAAACTTGTTCAAGATCTTGATCTCAACAGAGACAATGAAATTAGCGAGACCGAGTTTGTTGAAGGTTTTACAAAATGGATGGACTCGAATTCCAGCCAAGCTGCTAACTCAAAATCTTCGTCTCACGAAATTCATCAAACCTGGGAAGATGTTGAAAAGGTGATGGAAGAGAATCAAACCAAAGGAGCATCTGCATGGTTGACAGCTATAGCATATGTGGTGTTGGGAGTTACTATACTGGCTCTTCTTGCAGAACCCTTAATAGCAAGTGTCCAAAAATTCTCTGAAGAAGCAGGAATTTCATCATTTTTCATCTCATTCATTTTAGTCCCCCTGGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAAAAGAGCAGCAATACTTCTCAGACAATGTATGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATCTCTATACTTATATATATGCGTGAGATCACTTGGGAATTCTCAGCTGATGTGCTAGTTGTGGCAATAGTTTGTGCTGTAATGGGCCTTACTGCTAGTTTTCGACCCACGTTTCCTCTTTGGACATCTTTCCCTGCATACCTCATGTACCTAATAGCATTGCTTTTGGTCTTTGTCCTCAAAGATGTTCTCAATTATGTTTAA 2139 0.3941 MRRTMSKVSSACFIFFAFVVVAALHVECRSLRPSVSDGVDAIQPQESYLQLNKDQRVVVESSSDDDEHFCKQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLASGGEQIFKILGPGVFGASAFDILGALPESLILVVTGLSSDKESAQEYASTGVGLLAGSSIMLLTVVWGTCVIIGKQKLKNDPDSFGTNSSNGGIKESLTGYGITMDVETRKMARIMVFSVIPLLIMQIPNLFNFSSTPRNVTLMVSLTVAVAFLISYFIYQVFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILTDDGTPNVAAISGLYHEISQSGGKDLLASEVKELLFGNKLNDTNIKEEQITDMLKVFDRNGDQIITKEEFVTGLTEYINQSKHALDRQYLPKESLNKMYQTFIKPWIEHVRKQRELKGHLISEVLKHAQNDMVGRLRQDDGRPDKTAIRRLFEEIDVNRDNHISRSELEKIVKDIHFGKVVETEEAVTKLVQDLDLNRDNEISETEFVEGFTKWMDSNSSQAANSKSSSHEIHQTWEDVEKVMEENQTKGASAWLTAIAYVVLGVTILALLAEPLIASVQKFSEEAGISSFFISFILVPLATNFREATSAIKEASHKKSSNTSQTMYEIYGAVFMNNILGFVVISILIYMREITWEFSADVLVVAIVCAVMGLTASFRPTFPLWTSFPAYLMYLIALLLVFVLKDVLNYV 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02415 712 Gene3D - 307 387 - -
Gma13g02415 712 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Gma13g02415 712 SUPERFAMILY EF-hand 335 517 IPR011992 -
Gma13g02415 712 ProSiteProfiles EF-hand calcium-binding domain profile. 347 382 IPR002048 GO:0005509
Gma13g02415 712 Gene3D - 388 528 - -
Gma13g02415 712 SMART efh_1 488 516 IPR002048 GO:0005509
Gma13g02415 712 SMART efh_1 351 379 IPR002048 GO:0005509
Gma13g02415 712 SMART efh_1 449 477 IPR002048 GO:0005509
Gma13g02415 712 Pfam EF-hand domain pair 448 513 IPR002048 GO:0005509
Gma13g02415 712 ProSitePatterns EF-hand calcium-binding domain. 360 372 IPR018247 -
Gma13g02415 712 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 557 711 - -
Gma13g02415 712 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 400 531 - -
Gma13g02415 712 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 14 393 - -
Gma13g02415 712 Pfam EF-hand domain pair 347 377 IPR002048 GO:0005509
Gma13g02415 712 Pfam Sodium/calcium exchanger protein 96 268 IPR004837 GO:0016021|GO:0055085
Gma13g02415 712 Pfam Sodium/calcium exchanger protein 560 703 IPR004837 GO:0016021|GO:0055085
Gma13g02415 712 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Gma13g02415 712 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Gma13g02415 712 CDD EFh 450 514 IPR002048 GO:0005509
Gma13g02415 712 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 400 531 - -
Gma13g02415 712 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 14 393 - -
Gma13g02415 712 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 557 711 - -
Gma13g02415 712 ProSiteProfiles EF-hand calcium-binding domain profile. 484 519 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02415 Gma-Chr13 38915070 38920289 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02415 400 705 EF-hand Containing Proteins AT1G53210 40.367 1.45e-62 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02415 - - gmx:100799062 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02415 13 38915070 38920289 Gma13g02415 13 38915070 38920289 ECH