Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00673 ATGTGTTTTTTAAGTCACACTGACTCACACACCACACCACACCACACAAGAGAGAGGAAAGAAGCAAGCAACAGACGGTCCCTTCTAACCTATATTGAGCTTATGGGTTCTTTGTTTAGTATGGCTAATACCAAGGCCAATCAAAGTGAGTCTAGTGAAATCTCTCCAAACGAGACCAGCAAGAGGCAAAGAATGTCACCTGCCTCTGTTGAAGAATGTCCAAGACTTATTCCTAATCTCCCTGATGAGTTATCCCTTCAGATTATTGCTAGACTTCCTAGAATTTGTTACTATCATGTAAGGCTGGTGTCTAGGAAGTGGAAAGCGACTATCACGAGTTCGGAATTATATAAAGTAAGAAAAGAGCTTGGAACAACTGAAGAGTGGCTATATCTGTTGGTTAGGATTGGACAAAATAAACTCTTATGGCATGCTCTAGACCCCCGTTCTCGAATATGGCAGAGACTTCCTATTATGCCTAGTGTTGTTGATGAGGAAGATTCCCAAAAGGGTTCTTCTGGGCTTTGGATGTGGAACATGGTAAAAGGTATCAGAATTGCTGAAATTATTAGAGGTCTGCTTGGACAGAAGGATGCATTGGATGACATGCCCTTTTGTGGTTGTGCTTTTGGAGCTGTTGATGGATGTCTTTATGTTCTAGGTGGATTTTCTAAATCTTCAACTATGAAATGTGTATGGCGATTTGATCCGATACAAAATGCGTGGAAGAAGGTGAATTCTATGTCTACAGGTAGGGCTTATTGTAAGACAGGAATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGCTGGATTGATTCCTCTTCAATCTGCTGAAGTTTATGACCCCTTCTCGGATACATGGTCCGATGTACCTAGTATGCCGTTCTCAAGAGCCGGAGTCCTGCCCACAGCTTTTTTGGCTGACATGTTAAAGCCTATTGCCACTGGGTTAACCTCGTACAAGGGAAGGTTATATGTTCCCCAAAGTTTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATATATGATCCTGAAACAAATTCATGGATGGAAATGCCAAATGGAATGGGTGAAGGGTGGCCAGTTAAGCAGGCAGGAACCAAATTGAGTGTTGTAGTGAATGGTGAATTATATGCTTTTGATCCTTCAAATTCTGTGGATAGTGGAAGGATCAAGGTATATGATCAAGGAGAGGATGAATGGAAAGTTGTTATTGGAAAAGTCCCTGTATATGACTTTACCGAATCGGAGTCTCCATATCTATTAGCTGGTTTCCATGGAAAGCTTCATTTCATCACAAAAGATGCCAATCATGATATTTCTGTTCTGAAGGCTGATCACTGCAGTAATGTGGATTCTTCACCATCAACCTCAGCACCTCAATCACCCAAATACATGGAAGATGAATTGTTGCGAGAATCAGCTGAAACACATGAAGCTGTTTGGAAACTAGTTGCAAGTAAGGGTTTTGAGCAGGCTGAACTGATCAATTGCCAAGTTATTGACATCTAG 1530 0.4131 MCFLSHTDSHTTPHHTRERKEASNRRSLLTYIELMGSLFSMANTKANQSESSEISPNETSKRQRMSPASVEECPRLIPNLPDELSLQIIARLPRICYYHVRLVSRKWKATITSSELYKVRKELGTTEEWLYLLVRIGQNKLLWHALDPRSRIWQRLPIMPSVVDEEDSQKGSSGLWMWNMVKGIRIAEIIRGLLGQKDALDDMPFCGCAFGAVDGCLYVLGGFSKSSTMKCVWRFDPIQNAWKKVNSMSTGRAYCKTGILNNKLYVVGGVSQAGLIPLQSAEVYDPFSDTWSDVPSMPFSRAGVLPTAFLADMLKPIATGLTSYKGRLYVPQSLYSWPFFVDVGGEIYDPETNSWMEMPNGMGEGWPVKQAGTKLSVVVNGELYAFDPSNSVDSGRIKVYDQGEDEWKVVIGKVPVYDFTESESPYLLAGFHGKLHFITKDANHDISVLKADHCSNVDSSPSTSAPQSPKYMEDELLRESAETHEAVWKLVASKGFEQAELINCQVIDI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00673 509 SMART kelc_smart 263 311 IPR006652 GO:0005515
Gma13g00673 509 SMART kelc_smart 216 262 IPR006652 GO:0005515
Gma13g00673 509 Pfam F-box-like 77 118 IPR001810 GO:0005515
Gma13g00673 509 ProSiteProfiles F-box domain profile. 74 120 IPR001810 GO:0005515
Gma13g00673 509 SUPERFAMILY F-box domain 76 119 IPR036047 GO:0005515
Gma13g00673 509 MobiDBLite consensus disorder prediction 1 24 - -
Gma13g00673 509 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 37 509 - -
Gma13g00673 509 MobiDBLite consensus disorder prediction 45 70 - -
Gma13g00673 509 Gene3D - 117 416 IPR015915 GO:0005515
Gma13g00673 509 MobiDBLite consensus disorder prediction 45 66 - -
Gma13g00673 509 SUPERFAMILY Kelch motif 131 437 IPR015915 GO:0005515
Gma13g00673 509 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 37 509 - -
Gma13g00673 509 Pfam Kelch motif 252 298 IPR006652 GO:0005515
Gma13g00673 509 Pfam Kelch motif 204 249 IPR006652 GO:0005515
Gma13g00673 509 MobiDBLite consensus disorder prediction 10 24 - -
Gma13g00673 509 SMART fbox_2 80 120 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00673 Gma-Chr13 20557270 20561144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00673 80 296 Miscellaneous Gene Families AT4G33900 25.561 2.70e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00673 - - gmx:100787256 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00673 13 20557270 20561144 Gma13g00673 13 20557270 20561144 ECH