Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00649 ATGGCTCAAGTGGGTTCTCTATCTTCCGAAATGGAGACACTGAATCATGTCCTAGCCCTAGTGGAGGCATTCCGAGCATTTGACGCGGACAACGATGGCCGAATCACGCAGGCAGAGCTAGGAGGAATCTTGGGGTCACTCGGGTACAACCCTAGCGAGCAAGAAGTTAGGGCAATGATTGAACACGGCGACAAGAACAAAGACGGGTTGTTGAGCATCCACGAGTTCTTGGAGATGAACACCAAGGATTTGGAGGGTGGAAATCTCGCCAACACCCTCAGCACCGCGTTTGAGGCTTTGGATGAAGACGGGAACGAGATTTTAACCGGGGAAGAGCTTCATGAGGTCATGCAAAACTTGGGTTTGGACTTGTCTCTTGAGAATTGTGTGCATCTTGTTACTTCTCTTGATGCGGATGGAGATGGGGCTGTGAGCTTGGATGAATTCAGGCTCATAGTCGATTCCCTAATCTAA 474 0.4979 MAQVGSLSSEMETLNHVLALVEAFRAFDADNDGRITQAELGGILGSLGYNPSEQEVRAMIEHGDKNKDGLLSIHEFLEMNTKDLEGGNLANTLSTAFEALDEDGNEILTGEELHEVMQNLGLDLSLENCVHLVTSLDADGDGAVSLDEFRLIVDSLI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00649 157 PANTHER CALCIUM-BINDING PROTEIN CML37 24 152 - -
Gma13g00649 157 PANTHER CALCIUM-BINDING PROTEIN CML37 15 79 - -
Gma13g00649 157 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Gma13g00649 157 PANTHER CALCIUM BINDING PROTEIN 15 79 - -
Gma13g00649 157 PANTHER CALCIUM BINDING PROTEIN 24 152 - -
Gma13g00649 157 ProSiteProfiles EF-hand calcium-binding domain profile. 124 157 IPR002048 GO:0005509
Gma13g00649 157 Pfam EF-hand domain pair 20 79 IPR002048 GO:0005509
Gma13g00649 157 Pfam EF-hand domain pair 93 150 IPR002048 GO:0005509
Gma13g00649 157 SUPERFAMILY EF-hand 18 153 IPR011992 -
Gma13g00649 157 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
Gma13g00649 157 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Gma13g00649 157 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Gma13g00649 157 SMART efh_1 55 83 IPR002048 GO:0005509
Gma13g00649 157 SMART efh_1 128 156 IPR002048 GO:0005509
Gma13g00649 157 SMART efh_1 92 120 IPR002048 GO:0005509
Gma13g00649 157 SMART efh_1 19 47 IPR002048 GO:0005509
Gma13g00649 157 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Gma13g00649 157 Gene3D - 84 156 - -
Gma13g00649 157 Gene3D - 2 83 - -
Gma13g00649 157 CDD EFh 20 79 IPR002048 GO:0005509
Gma13g00649 157 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00649 Gma-Chr13 20182905 20183701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00649 16 153 EF-hand Containing Proteins AT1G24620 36.232 4.48e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00649 - K02183 gmx:100782291 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00649 13 20182905 20183701 Gma13g00649 13 20182905 20183701 ECH