Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma13g00229 | ATGGTTGGCAAGGAGAGTTTGAGAACTCATGAGGTCTTGAACTTTAGCTTTGAGAAGCTTATGATGGTTGACTGTGGTGGAAATAGTGGGAAAGGAGTGAACTTTAAAGCGGGGGTGATCACAGAATGGAAGGATATTCCAGTTGAGCTTTTGATGCAGATTTTGTCACTTGTGGATGATCAAACGGTTATGATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTGACTCGGTTATCACTCTCATGGTGTAGCAAGAACATGAATAATTTGGTCCTATCCCTAGCTCCTAAATTCACAAAATTACAGACTTTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGACAATGCTGTTGAAACTATTTCAAATTTTTGTCATGACCTCCAAATCTTGGACCTCAGCAAAAGTTTCAAGCTTACCGATCGTTCGTTGTATGCCATAGCCCTTGGTTGTCAGGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAATGCTCTGGCTTACCTGGCCAGTTTTTGTAGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGATACTGCGTTACAGGCAATTGGGCATTACTGCAATCAGTTACAGTTTTTGAACCTTGGATGGTGTGAAAATGTCAGCGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCGTGATCTTAGAACACTCGATTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGCCTTGGCAAACAGATGTCCTCATCTGAGGTCCCTTGGACTTTACTTCTGCCAAAACATCACAGACAGGGCAATGTATTCCTTGGCACAAAGCAAAGTGAACAACAGGATGTGGGGTTCTATGAAAGGTGGTGGAAATAATGATGATAATGATGATGGACTAAGAACTTTGAACATTAGCCAATGCACAGCACTCACCCCTTCTGCTGTGCAAGCTGTGTGTGACTCATGCCCTTCCCTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAATCTGACTTCTGTGCATTGTGCTTGTGCTGGCCAAGCACACCGTGCTTTCACTCTCCCACATGCAGCTCATTGA | 1128 | 0.4344 | MVGKESLRTHEVLNFSFEKLMMVDCGGNSGKGVNFKAGVITEWKDIPVELLMQILSLVDDQTVMIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLAPKFTKLQTLILRQDKPQLEDNAVETISNFCHDLQILDLSKSFKLTDRSLYAIALGCQDLTKLNISGCSAFSDNALAYLASFCRKLKVLNLCGCVKAASDTALQAIGHYCNQLQFLNLGWCENVSDVGVMSLAYGCRDLRTLDLCGCVLITDDSVIALANRCPHLRSLGLYFCQNITDRAMYSLAQSKVNNRMWGSMKGGGNNDDNDDGLRTLNISQCTALTPSAVQAVCDSCPSLHTCSGRHSLIMSGCLNLTSVHCACAGQAHRAFTLPHAAH | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma13g00229 | 375 | SUPERFAMILY | RNI-like | 70 | 286 | - | - | |
| Gma13g00229 | 375 | Pfam | F-box-like | 44 | 77 | IPR001810 | GO:0005515 | |
| Gma13g00229 | 375 | Pfam | Leucine Rich repeat | 262 | 285 | IPR001611 | GO:0005515 | |
| Gma13g00229 | 375 | Pfam | Leucine Rich repeat | 236 | 259 | IPR001611 | GO:0005515 | |
| Gma13g00229 | 375 | Pfam | Leucine Rich repeat | 210 | 233 | IPR001611 | GO:0005515 | |
| Gma13g00229 | 375 | SUPERFAMILY | F-box domain | 43 | 82 | IPR036047 | GO:0005515 | |
| Gma13g00229 | 375 | Gene3D | - | 40 | 79 | - | - | |
| Gma13g00229 | 375 | PANTHER | F-BOX SKP2A-LIKE PROTEIN | 1 | 357 | - | - | |
| Gma13g00229 | 375 | PANTHER | UNCHARACTERIZED | 1 | 357 | - | - | |
| Gma13g00229 | 375 | SMART | LRR_CC_2 | 183 | 209 | IPR006553 | - | |
| Gma13g00229 | 375 | SMART | LRR_CC_2 | 104 | 130 | IPR006553 | - | |
| Gma13g00229 | 375 | SMART | LRR_CC_2 | 131 | 156 | IPR006553 | - | |
| Gma13g00229 | 375 | SMART | LRR_CC_2 | 262 | 287 | IPR006553 | - | |
| Gma13g00229 | 375 | SMART | LRR_CC_2 | 157 | 182 | IPR006553 | - | |
| Gma13g00229 | 375 | SMART | LRR_CC_2 | 210 | 235 | IPR006553 | - | |
| Gma13g00229 | 375 | SMART | LRR_CC_2 | 78 | 103 | IPR006553 | - | |
| Gma13g00229 | 375 | SMART | LRR_CC_2 | 236 | 261 | IPR006553 | - | |
| Gma13g00229 | 375 | SMART | LRR_CC_2 | 310 | 332 | IPR006553 | - | |
| Gma13g00229 | 375 | Gene3D | Ribonuclease Inhibitor | 80 | 308 | IPR032675 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma13g00229 | Gma-Chr13 | 12101290 | 12105130 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma13g00229 | K03875 | - | gmx:121173056 | 754.977 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma13g00229 | 13 | 12101290 | 12105130 | Gma13g00229 | 13 | 12101290 | 12105130 | ECH |