Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00216 ATGAAAGTGACTTGGAAGAACAAGAAGAAGAAACGTTGTTTACCCACGTTGTCACACTTCACTGACCTTCCCTTTGAGCATAATCATCAACAACACTCCAACACCGACGCTGAAGATGGCGCGCATGTTCCCGACGCCACACAATTGGCTAACGAATTTCAAGCTCAAGGAGACAAGCTTGCTATGGATGGGAAGTACCGGGAAGCACTAGGTAAATGGGAAGCTGCTCTTGCGTTGGCGCCTGATGTTCCAGTTGTGCATGAACAAAAGGCCCAAGTTTTACTAGAAACTGGAGATGCTTGGAATGCTTTAAAGGCTGCTACTCGAGCTACTGAATTGGACCCATCATGGGCTGAGGCATGGGTCACACTTGGCAGAGCACAACTTAATTTTGGTGAGCCTGATAATGCTATTGAAAGCTTTGACCGTGCTCTAGCTCTCAAGCCTGATTATGAGGAAGCTCAAGATGATAGGAAAACTGCATCACGTCTTGTTAAGAAGAGAAAGCAACTTCACTCATCTGGCCTGAGTGCCACTCAAAATCGTTATATGGTTGGTGAAAAGGATGAAAACCAGTAA 579 0.4577 MKVTWKNKKKKRCLPTLSHFTDLPFEHNHQQHSNTDAEDGAHVPDATQLANEFQAQGDKLAMDGKYREALGKWEAALALAPDVPVVHEQKAQVLLETGDAWNALKAATRATELDPSWAEAWVTLGRAQLNFGEPDNAIESFDRALALKPDYEEAQDDRKTASRLVKKRKQLHSSGLSATQNRYMVGEKDENQ 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00216 192 ProSiteProfiles TPR repeat profile. 118 151 IPR019734 GO:0005515
Gma13g00216 192 Pfam Tetratricopeptide repeat 90 151 - -
Gma13g00216 192 MobiDBLite consensus disorder prediction 172 186 - -
Gma13g00216 192 Gene3D Tetratricopeptide repeat domain 42 188 IPR011990 GO:0005515
Gma13g00216 192 PANTHER OSMOSIS RESPONSIVE FACTOR 1 191 - -
Gma13g00216 192 SUPERFAMILY TPR-like 48 168 IPR011990 GO:0005515
Gma13g00216 192 MobiDBLite consensus disorder prediction 152 192 - -
Gma13g00216 192 ProSiteProfiles TPR repeat region circular profile. 118 150 - -
Gma13g00216 192 SMART tpr_5 84 117 IPR019734 GO:0005515
Gma13g00216 192 SMART tpr_5 118 151 IPR019734 GO:0005515
Gma13g00216 192 SMART tpr_5 50 83 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00216 Gma-Chr13 11559259 11567745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00216 57 155 EF-hand Containing Proteins AT2G32450 32.323 2.53e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00216 - - gmx:100305761 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00216 13 11559259 11567745 Gma13g00216 13 11559259 11567745 ECH