Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00179 ATGTCACCTTCCCCTTCTTTTCCTTCAGAGAACAGAACAAAATGGAGGAAGAAGCGAAAGAGAGAATCCTACAAACGCAACCAGAAGCGTCACGGCGGcgacgaagacgactccgacgacgacaacgagcccgacgacaacgacgactccgacgacCAATTCCGCAGCCCTAGCGCCCAATTCGCGGACCCGCAGCGCGTGGAGATCGAGGTCGTGTCGCCCGACGGGGTCCAGATTTCGCGGTTCCCGCCGGCGATCAGGCGCGCCGTGACCCGCCCCCATGCGGCGGTCACGGCAATCGCTGCGCTGGAGGCCGGCGGCGACAAATCGCAACACAGCAGCATTCCGGTTCTGGAGAATGTGTCGCACGGCCAGCTCCAGGCGCTGTCGGCGGTGTCCGCCGATTGCTTCGTCATTGCTCCGCCGTCCGTTTTGAAAGGCTCCGGCGTCGTTAAGCGGTTCGGGAGTAGGGTTCTTGTTGTTCCTATGCATTCAGCAGATTGGTTTTCTCCAGCCTCAGTGCATCGTCTTGAGAGACAAGCAGTGCCTCATTTCTTCTCAGGAAAGTCGCCAGATCATACGCCAGAGAAGTACATGGAGTGTAGGAACTACATTGTTGCAAGATACATGGAGGACCCAGGGAAGAGGATTACAGTCTCTAGTTGCCAGGGATTGTCAGTTGGTGTTGGTAATGAAGATTTAACTCGAATTGTTAGGTTCCTTGATCACTGGGGAATTATCAATTACTGTGCTCCGGGTCCAAGTCATGAGAATTCGGACAATGAGACTTACCTGAAGGAGGACACAAGTGGTGCAATATGTGTGCCATCAGCAGGTTTAAGATCCATCGATAGTTTGGTCAAATTTGACAAGCCCAAGTGTAAATTCAAAGCAGATGAAATTTATTCATCTCGAACAATGCACAATACTGATATTTCTGATTTGGATGAAAGAATAAGAGAGCATCTATCTGAAAACTATTGCCATTATTGTTCTTGTTCTCTTCCTGTTGTGTACTACCAATCACAAAAGGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCACTGGTCATTCTAGTATAGATTTTATAAGGGTGGATTCAACTACAGATTTTGGTGATCTAGATGGGGATAGTTGGACTGATCAAGAGACTTTGCTGCTGCTTGAAGCAGTGGAGGTTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGCACCAAGTCGAAAGCACAATGCATTCTTCATTTTCTCCGTTTACCTGTAGAAGATGGAAAGTTGGAAAATATCAATGTTTCAAGTTTGTCTTTGTCATCCATTGTGAAGAATCAAGAGGATAATGGAAGATTGCATTGTTGCTCAAATGGGGATTCTGCAGGACCTGTACATAACAGCCAAGATTCTGATGGCAGGCTTCCTTTTGCAAATTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCCTCTGCTGTTGGACCAAGAGTTGCTGCAACTTGTGCTCATGCAGCATTAGCTGCATTGTCAAGGAATAATTCTGGGAGCACGTCACATATAGAAGCACCGGATAATGATAATAGGACAAATTCAGAAAGCGTGCATAATAGAGATGGTGGCCATGATGGAGAGGTTGCAAATTCAAATCAGAAAAATGAGGACAAGTCAAAAGTACTTGGTTCATGTGGTCAAAATGAGGGAGGGTCAACCCTGCTATCTGCTGAGAAAATCAAAGATGCTGCCAAAGAAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCATGAAGAGCGAGAAATTCAGAGGCTATGTGCCAATATTGTTAATAATAAGTTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAAACACAGTTGATGAGAGAATGTGAACAAGTTGAGAAGGTGAAGCAGAGGTTGGCTTCTGATCGGTCCCATATTGTATCAACACGTCTTGGAAATGGTGGAACCACCCCGCCAATGAATGTTGCAGGTGCTGGTCCATCCATGGTTAACAACAACAGCAATGGTAGGCAACAAATGATTTCTGCTTCTTCCTCACAACCTAGCATCTCAGGATATGGCAATAGCCAACCAGTTCATCCACATATGTCCTTCGTCCCACGGCCTTCAATGTTTGGGCTGGGGCAAAGGCTGCCACTTTCTATGATTCAACAACAACATTCAGCTTCTTCAGATCCGATGTTCAATGGCCCCGGTAATTTGCAGCCTACTCCCAATCATTCAGTGTCGAGGCCGAAAATTATTGTATTGGATAAAAATATCCATGTATGTACCTTCACGGAATCACGGCGTAACAGAAAAAAGAGTTTGCCTCGATCATTCTTTATTAAAAGAAGGGGTAAATATCTAACTTTATCTTGA 2421 0.442 MSPSPSFPSENRTKWRKKRKRESYKRNQKRHGGDEDDSDDDNEPDDNDDSDDQFRSPSAQFADPQRVEIEVVSPDGVQISRFPPAIRRAVTRPHAAVTAIAALEAGGDKSQHSSIPVLENVSHGQLQALSAVSADCFVIAPPSVLKGSGVVKRFGSRVLVVPMHSADWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMECRNYIVARYMEDPGKRITVSSCQGLSVGVGNEDLTRIVRFLDHWGIINYCAPGPSHENSDNETYLKEDTSGAICVPSAGLRSIDSLVKFDKPKCKFKADEIYSSRTMHNTDISDLDERIREHLSENYCHYCSCSLPVVYYQSQKEVDILLCTDCFHDGRFVTGHSSIDFIRVDSTTDFGDLDGDSWTDQETLLLLEAVEVYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGKLENINVSSLSLSSIVKNQEDNGRLHCCSNGDSAGPVHNSQDSDGRLPFANSGNPVMALVAFLASAVGPRVAATCAHAALAALSRNNSGSTSHIEAPDNDNRTNSESVHNRDGGHDGEVANSNQKNEDKSKVLGSCGQNEGGSTLLSAEKIKDAAKEGLSAAAMKAKLFADHEEREIQRLCANIVNNKLKRLELKLKQFAEIETQLMRECEQVEKVKQRLASDRSHIVSTRLGNGGTTPPMNVAGAGPSMVNNNSNGRQQMISASSSQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQQHSASSDPMFNGPGNLQPTPNHSVSRPKIIVLDKNIHVCTFTESRRNRKKSLPRSFFIKRRGKYLTLS 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00179 806 Pfam SWIRM-associated region 1 590 662 IPR032451 -
Gma13g00179 806 PANTHER SWI/SNF COMPLEX-RELATED 60 766 - -
Gma13g00179 806 Pfam Myb-like DNA-binding domain 385 427 IPR001005 -
Gma13g00179 806 CDD SANT 385 427 IPR001005 -
Gma13g00179 806 ProSiteProfiles SANT domain profile. 381 432 IPR017884 -
Gma13g00179 806 SUPERFAMILY Homeodomain-like 167 249 IPR009057 -
Gma13g00179 806 SMART sant 382 430 IPR001005 -
Gma13g00179 806 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 60 766 - -
Gma13g00179 806 SUPERFAMILY Homeodomain-like 383 436 IPR009057 -
Gma13g00179 806 ProSiteProfiles Myb-like domain profile. 385 428 IPR001005 -
Gma13g00179 806 Gene3D - 382 432 - -
Gma13g00179 806 MobiDBLite consensus disorder prediction 458 480 - -
Gma13g00179 806 MobiDBLite consensus disorder prediction 1 68 - -
Gma13g00179 806 ProSiteProfiles Zinc finger ZZ-type profile. 323 377 IPR000433 GO:0008270
Gma13g00179 806 ProSiteProfiles SWIRM domain profile. 160 258 IPR007526 GO:0005515
Gma13g00179 806 MobiDBLite consensus disorder prediction 518 570 - -
Gma13g00179 806 Pfam SWIRM domain 165 249 IPR007526 GO:0005515
Gma13g00179 806 MobiDBLite consensus disorder prediction 465 480 - -
Gma13g00179 806 Gene3D - 166 252 IPR036388 -
Gma13g00179 806 Coils Coil 614 641 - -
Gma13g00179 806 MobiDBLite consensus disorder prediction 531 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00179 Gma-Chr13 10645719 10651905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00179 328 424 EF-hand Containing Proteins AT3G07740 33.962 8.16e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00179 K11649 - gmx:732600 1472.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00179 13 10645719 10651905 Gma13g00179 13 10645719 10651905 ECH