Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02188 ATGGCTACGCATACGCCCAAAAATATCCTCATTACTGGAGCTGCTGGATTCATCGCATCTCATGTTGCGAACCGTCTTATCCGGAATTATCCCCAGTACAAAATTGTTGTTCTTGACAAACTTGATTATTGCTCGAATCTGAAGAATCTCATTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATCACCGAGTCCATTGACACAATAATGCACTTTGCTGCTCAAACCCATGTTGACAACTCGTTTGGTAACAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAAGAGGTTCATCCATGTGAGCACTGATGAGGTCTATGGAGAGACAGATGAGGATGCTGTTGTTGGAAACCACGAGGCTTCTCAGTTACTCCCAACAAATCCATACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTGATGGCATATGGAAGGTCATATGGGTTACCTGTGATCACAACACGAGGAAACAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTCCTGGCCATGCAAGGCAAGCCTCTTCCAATCCACGGGGATGGTTCTAATGTGAGGAGTTATTTGTATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTCGGGCATGTTTACAATATTGGTACTAAGAAGGAAAGGAGGGTTATTGATGTTGCCAAAGATATATGCAGGCTTTTTAAGATGGACCCAGAGACTAGTATAAAATTTGTGGAGAACAGACCATTTAATGACCAGAGATACTTTCTTGATGATGAAAAGCTGAAAATCTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCTTGAAGAAAACCATGGACTGGTATATCAACAATCCTGATTGGTGGGGTGATGTCAGTGGTGCATTGCTTCCCCATCCAAGGATGCTGATGATGCCCGGTGGACTGGAGAGACATTTTGATGGATCTGACGAAGAAAAACCTCCATCGTATGTCTCAACTAATACTCGAATGGTGGTTCCGACATCCAAGAATGTTAACTCCTCACAGAAACCTGCTCTCAAGTTCTTGCTCTATGGCAGAACAGGTTGGATTGGGGGTTTGCTGGGGAAGTTGTGTGAAAAACAAGAAATTCCCTACGAATATGGAAAAGGACGACTAGAGGACCGATCATCACTTGTGGCTGATATTCAGAATGTGAAGCCAACACACATTTTTAATGCAGCAGGAGTAACTGGCAGACCCAATGTTGATTGGTGTGAATCTCACAAGACAGAAACCATTCGCACCAACGTTGCTGGGACTTTAACATTGGCTGATGTCAGCAGAGAGCATGGAATCTTGATGATAAATTATGCTACTGGGTGCATATTTGAGTATGACAAAGCTCATCCAGAGGGTTCTGGCATTGGCTTTAAGGAGGAAGACAAACCCAACTTCATTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTCGAAGAGCTCTTGAAAGAATATGACAATGTGTGCACCCTCAGGGTTCGCATGCCAATTTCATCTGACTTGAGCAATCCGCGCAATTTCATCACCAAGATTTCTCGTTATAACAAAGTAGTCAACATTCCAAACAGCATGACCATTTTGGATGAACTTCTGCCGATTTCAATTGAGATGGCAAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAATCCTGGGGCCGTGAGCCACAATGAGATTCTCGAGATGTACAGGGATTACATTGATCCAAGCTTCAAGTGGACTAACTTCAATCTTGAAGAGCAAGCCAAGGTGATAATTGCTCCACGGAGCAACAATGAGATGGATGCATCCAAACTGAAGAACGAGTTCCCTGAGCTTCTTTCCATCAAGGAATCACTGATCAAGTATGTCTTTGAGCCAAACAAGAAAACTGCTTAA 2010 0.4348 MATHTPKNILITGAAGFIASHVANRLIRNYPQYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICRLFKMDPETSIKFVENRPFNDQRYFLDDEKLKILGWSERTTWEEGLKKTMDWYINNPDWWGDVSGALLPHPRMLMMPGGLERHFDGSDEEKPPSYVSTNTRMVVPTSKNVNSSQKPALKFLLYGRTGWIGGLLGKLCEKQEIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVSREHGILMINYATGCIFEYDKAHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPSFKWTNFNLEEQAKVIIAPRSNNEMDASKLKNEFPELLSIKESLIKYVFEPNKKTA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02188 669 Pfam RmlD substrate binding domain 385 555 IPR029903 -
Gma12g02188 669 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Gma12g02188 669 PANTHER BNAC05G13120D PROTEIN 2 666 - -
Gma12g02188 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Gma12g02188 669 Gene3D - 200 322 - -
Gma12g02188 669 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 2 666 - -
Gma12g02188 669 CDD dTDP_HR_like_SDR_e 385 657 - -
Gma12g02188 669 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 377 657 IPR036291 -
Gma12g02188 669 TIGRFAM dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 8 328 IPR005888 GO:0008460|GO:0009225
Gma12g02188 669 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Gma12g02188 669 Gene3D - 9 313 - -
Gma12g02188 669 Gene3D - 373 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02188 Gma-Chr12 42923051 42926852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02188 8 321 Miscellaneous Gene Families AT4G00110 27.083 8.88e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02188 K12450 - gmx:100775641 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02188 12 42923051 42926852 Gma12g02188 12 42923051 42926852 ECH