Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02149 ATGTCGCGTTCGTCGGGGAAGCCGGTTTCCGAGGTGGTCGGCATAGACGCCACCTTCGCCGATCGGTTCCGCGACGCGCTGACCTGCGACGACGGCAGCAACAACAACAACAATATTAACAAGCCCGACTTCCGAGAACTCGATCTGGGCTCGCCGGTCTCGCCATTGCGGACCACGCGCGGGCCTGCCGCCAGTAGCAGCTCCAGCTCCTCGGGCTCCTTCTCGGGCCGAACCGGGCCCACCCGCAAGCCTGAATCGGCTCAAAATAATAGCAACACCAACACTCACACTCATAGTCTCAGCAACAACAACAACTCCGGTGAACTTTCTGGTTCAAGTGAGAACAGCCCCACCGCGCGTAAACCGGGTCACAGGAGATCTGACTCCGGATCTGCGCTGGTGCCGTTGATATACTCCGGTCAGACGGCGACTTCGCCGGCCATGAATGTTCTTCCGACCGGGAACATTTGTCCATCTGGGAAGATCTTGAAGGCGGGGATGATGGCGAATCGGAGTAGCAGAACTAGTAGAAGCGATGTTTTGGGGTCGGGGATGGGAAACTACGGCCACGGAAGCATAATGCGTGGCGGAGGGAAGGTGGAGCCGGCGAGTTCTCGCGGCGGCGGCGGTGGGAATGAGACGGTGAAGAAAGGGGGGCACGTGCAGAGTGTGGATCCGGAAGAGTTGAAGAGGTTGGGGAACGAGTGTTACAAAAGGGGGAACTTTGCTGATGCGTTGAGTCTCTATGATCGCGCGATTGCGATGTCGCCGGCGAGTGCCGCTTACCGGAGCAACCGCGCGGCGGCGCTGACGGGCCTCGGACGGTTGGGTGAGTCTGTGAGGGAATGTGAGGTGGCTGTGAGGTTGGATCCTAATTATGGAAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTGGGACAAGTTGAGAATGCAAGGAAGCACCTTTGTTATCCTGGGATGCAGCCAGAGCCGTCTGAGATGCAGAGGTTGCAAGTGGTGGAAAAGCATATCAGCAAATGTGGGGATGTACGGAGGGTTGGGGAATGGAAGAGTGTTCTCAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCGGATTCTTCGCCTCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCGGAATCAATTTTGTTGAGTATTCCCAAATCAGAGCTGCAAATTAATTCCTCTTCTCAGGCAAGGTTTTTTGGGATGCTATCAGAGGCTTATTCCTATTTTGTCAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCCTGTCAGATTGATTCCCGGAATGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCAAGGGCTCGAGTGCGCGGAAATGATCTTTTTAAATCTGAAAGGTACACTGAGGCTTGCTCGGCATATGGGGAAGGTTTGAGACTGGACCCTTCGAATTCTGTTCTATATTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAACAGTCAATTGAAGACTCCAACCAAGCTTTACATATCCAACCAAATTACACCAAGGCCCTTCTTCGAAGAGCTGCATCAAACAGTAAGCTAGAAAGGTGGGAAGAAGCAGTCAAAGATTATGAGATCTTGCGGAGAGAACTTCCAAATGACAATGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTAAAGAAATCACGAGGGGAAGAAGTATATAATTTAAAATTTGGTGGTGAAGTGGAAGAAGTCTCAGGTCTTGAGCAGTTTAGAGCTGCAATTTCTTTACCAGGTGTATCTGTTGTCCATTTTGAAGTTGCATCTAACTTGCAATGCAAACAAATATGGCCATTTGTCAATACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAGCAAAGCCCAACAGTTGCAACTGCAGAGAACGTTCGGATTGTACCGACCTTCAAGATATACAAAAATGGCAGCCGGGTGAAGGAAATCGTATGCCCTAGTCGCGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2097 0.5069 MSRSSGKPVSEVVGIDATFADRFRDALTCDDGSNNNNNINKPDFRELDLGSPVSPLRTTRGPAASSSSSSSGSFSGRTGPTRKPESAQNNSNTNTHTHSLSNNNNSGELSGSSENSPTARKPGHRRSDSGSALVPLIYSGQTATSPAMNVLPTGNICPSGKILKAGMMANRSSRTSRSDVLGSGMGNYGHGSIMRGGGKVEPASSRGGGGGNETVKKGGHVQSVDPEELKRLGNECYKRGNFADALSLYDRAIAMSPASAAYRSNRAAALTGLGRLGESVRECEVAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYPGMQPEPSEMQRLQVVEKHISKCGDVRRVGEWKSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAESILLSIPKSELQINSSSQARFFGMLSEAYSYFVRAQIEMALGRFENAVTAAEKACQIDSRNVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWEQSIEDSNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEILRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASNLQCKQIWPFVNTLCGRYPSINFLKVDIQQSPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02149 698 Pfam Tetratricopeptide repeat 232 292 - -
Gma12g02149 698 MobiDBLite consensus disorder prediction 27 131 - -
Gma12g02149 698 MobiDBLite consensus disorder prediction 191 223 - -
Gma12g02149 698 Pfam Tetratricopeptide repeat 419 449 IPR019734 GO:0005515
Gma12g02149 698 Gene3D Glutaredoxin 591 697 - -
Gma12g02149 698 ProSiteProfiles TPR repeat profile. 498 531 IPR019734 GO:0005515
Gma12g02149 698 Pfam Thioredoxin 604 689 IPR013766 -
Gma12g02149 698 ProSiteProfiles TPR repeat profile. 226 259 IPR019734 GO:0005515
Gma12g02149 698 Gene3D Tetratricopeptide repeat domain 224 584 IPR011990 GO:0005515
Gma12g02149 698 MobiDBLite consensus disorder prediction 58 118 - -
Gma12g02149 698 SUPERFAMILY Thioredoxin-like 501 696 IPR036249 -
Gma12g02149 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 16 696 - -
Gma12g02149 698 CDD TRX_family 603 690 - -
Gma12g02149 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 16 696 IPR044534 -
Gma12g02149 698 SMART tpr_5 418 451 IPR019734 GO:0005515
Gma12g02149 698 SMART tpr_5 226 259 IPR019734 GO:0005515
Gma12g02149 698 SMART tpr_5 260 293 IPR019734 GO:0005515
Gma12g02149 698 SMART tpr_5 464 497 IPR019734 GO:0005515
Gma12g02149 698 SMART tpr_5 532 565 IPR019734 GO:0005515
Gma12g02149 698 SMART tpr_5 498 531 IPR019734 GO:0005515
Gma12g02149 698 SUPERFAMILY TPR-like 226 453 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02149 Gma-Chr12 42369130 42372806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02149 240 562 Glycosyltransferase AT3G04240 21.951 6.56e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02149 - - gmx:100804531 1302.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02149 12 42369130 42372806 Gma12g02149 12 42369130 42372806 ECH