Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02112 ATGGCGGGTGAGGTTGTGGGATTTGAGATGGTTCAAGGACCAGTGGAGAATGGTACTGAGGGAGGAAAACCTGTTTTGAATGAGAAGGAGAATGGCAAGCTGGAAAAAGATGTGGGAGCTGCTGCGGATGCCATCAAATTTGGGACACATGGAGAGGAATCTGCAAAAAAGAAAGGGAATGATGTTTCAGACGTGAATGCCCCGAAAGATGCTGCTGAAGATTGGCCTGCACCTAAGCAGATTCATTCTTTTTATTTTGTCAGGTGGCGGCCTTATGATGATCCAACCATCAAGTCTAAAATCGACCTGTCTGACAAAGATATTAGCAAGAAAAATCAAGCCCGGTTTCAGATCACAGAAGCACTGAAGGCAAAGCGGGCTGAACGAGTAGAGTTGATTTCTCAGGTCAAGTCTCTAAGAGGCGACAGTAGGCAATTTCAGAGTATTGTGGATGAGAAATTGAAAGAGATTGGACCTCTGCAGCAAGCACTGGGCAAGCTGCGGACTACAAATAATGCCGGCCGGGGTGGTTTGTGTTCATCTGAGGATGAACTTAACAGTGTTATATATAGTTTACAATACCGCATACAGCATGAGAGCATTCCTTTGACTGAGGAAAAACAAATCCTCCGAGAAATCAAACAGCTTGAGGGGACAAGGGAGAAAGTTATTGCTAATGCTGCAATGAGGGCCAAATTACAGGAATCTATGGGGCAAAAAGAAGCCATTCAAGATCAGGTTAAGCTTATTGGTGGGGATTTGGATGGAGTGAAGAAAGAGAGAGAAGCAATTCGGTCCAAAATCAAGCAAATTGATGATGCACTGAAAGCCATAGACAAGGATATCCAGTCTCTACAGGAGGAACTGACAGCTGTTTCTCAGAAGAGGGACAAAGCTTTTGAGAGTATACAGCAGCTAAGAAAACAGCGCGAGGAGGGGAACACCTATTTCTACCAAAGTCGTACGGTTCTGAACAAAGCACGGGAGCTGGCTGCAAAGAAAGATATTAATGCTCTTGATGAAGTTTCACAGACAGAGGTTGAGAAATTTATGGCACTCTGGAACAAGGACAAAGCATTTAGGAATGATTATGAAAAAAGAATTTTGGCCTCATTGGATATGCGACAGTTGAGTCGGGACGGACGGATGAGGAACCCGGATGAAAAGCCAATTCTGGAAGAACCAAAACCTGCTGAAGCTGAAGCATTACCAAAAATGGCTGCAAAACAGCCAAAGGAGGAACCTAAGCCTTCTCCACAAGAAACTTTGCCTGCTCAGAAAGAATCCAAAACCACTCAGAAAGATTCCAAAAACAAGGGGAGGGATTTGAAATCCAAACTGGAGAGTAAGGATGTAGCAGAAACTGATGAATATGAATTTGAAAGTCCCGAAAAGGAGGCCCCTGCCAAAGAGCCTGAAATTGATCCAGCAAAGCTGAAAGAGATGAAAAGAGAGGAGGAAATTGTGAAGGCGAAGCAGGCCTTGGAAAGAAAGAAGAAGTTAGCAGAGAAAGCTGCAGCCAAAGCAGCCATCAGAGCACAAAAGGAAGCTGAGAAGAAGCTTAAGGACCGTGAGAAGAAAGCAAAGAAGAAATCAGGCACTGCAGCCGTGGCCAACCCTGAGGACGAACCGAAGGATGAAGTTGTCGAGGTTACAGAGCCAGAAAAGATTAACGATGATGTCCAAGCCCCGGCTCCAGTGAAGGAAAAGGTCCAAAAGGAGAGTGGCATCAGGTCCAGGGGCCGAGCAAGAGGCCCGGACTCGATTCCAAAAGCTATTATTAAGCGGAAGAAGTCTAACAATTACCTGATATGGGCTGCAGCTGCCACCTTGCTAGTCCTCCTGTTGGCTGTGCTTGGGTACCAATCGGAAATAATCAATGAGCAAAGTTGTTCCTTCTACCATGAATCAGGGTTTGAGTTGCAGACTGTAGATAAAGGTGGAACCCCCATGGCTGTTACAGCCTCTAGCTTTGGAACTACATGGTGTCTTAGAAGAGCAGCTCAGGCTTTTGCTATCTCTCATTCTCATATTCTCCGCAACAATGTTAAACTCTCTTTGCAGAGGAACTTTTGCTCTCATCTTCTCTCCGTTTCTACTTCTTTAGCTTCAGGTGTAAGCCAGACAGTACAAGCTCTAAAGGGAGAAGTTGACTTGTTACTCAAAGGAGTAGGAGAAAGAAGTGTAACGAAAGAAGTAAAACATATTCTTGAGATGGCTAGACGAGCATCATTAAAGCGAGAGATTCTCCATACAGATTTTCTAACCCCTCCAGTGTTAAAGGAATCTATGCAAGTTTTGGAAAAACTAGCAGACGTGAAAGCAATTGCTCAAGGAGGTTACCCTCAGGCTGAACGTTGTCGGATTTCTGTTGGACATCCAGAAGAACTGACCAGTGATCCAGATATTATTTCAGCATTAAGCATTACAGGAAACTTCCAGTTTGAACCTTGCTCGCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGAGAAACTTGGAGACATTATATTGCAGGGGGAACAGGGTGCTCAGATAATTGTTGTACCTGAACTCGTTGAATTTCTCATGTCAACACTGGTTAAGGTTCGTAATGTTCCTGTATCTTGCACTAAGATTCCATTAATTTCTCTTGATTATGAACCACCAAGAACAAAATCATTCAAAACTATAGAAGCATCACTAAGAGTTGATGCACTAGCTAGTGCTGGATTTAAAGTTTCACGTTCAAAGCTAGTTGACATGATCAGCAATGGTGATGTGCGTATCAACTGGATCCCTGTTACTACCAAAGGAACCACACTCAAGAGTGGAGATATTGTATCAATTAGTGGCAAGGGAAGATTAAAGATAGGAGAAATAAACTCCACAAAGAAAGGAAAGTTTGCAGTGGAGCTCATTCGGTATTTGTAG 2925 0.4383 MAGEVVGFEMVQGPVENGTEGGKPVLNEKENGKLEKDVGAAADAIKFGTHGEESAKKKGNDVSDVNAPKDAAEDWPAPKQIHSFYFVRWRPYDDPTIKSKIDLSDKDISKKNQARFQITEALKAKRAERVELISQVKSLRGDSRQFQSIVDEKLKEIGPLQQALGKLRTTNNAGRGGLCSSEDELNSVIYSLQYRIQHESIPLTEEKQILREIKQLEGTREKVIANAAMRAKLQESMGQKEAIQDQVKLIGGDLDGVKKEREAIRSKIKQIDDALKAIDKDIQSLQEELTAVSQKRDKAFESIQQLRKQREEGNTYFYQSRTVLNKARELAAKKDINALDEVSQTEVEKFMALWNKDKAFRNDYEKRILASLDMRQLSRDGRMRNPDEKPILEEPKPAEAEALPKMAAKQPKEEPKPSPQETLPAQKESKTTQKDSKNKGRDLKSKLESKDVAETDEYEFESPEKEAPAKEPEIDPAKLKEMKREEEIVKAKQALERKKKLAEKAAAKAAIRAQKEAEKKLKDREKKAKKKSGTAAVANPEDEPKDEVVEVTEPEKINDDVQAPAPVKEKVQKESGIRSRGRARGPDSIPKAIIKRKKSNNYLIWAAAATLLVLLLAVLGYQSEIINEQSCSFYHESGFELQTVDKGGTPMAVTASSFGTTWCLRRAAQAFAISHSHILRNNVKLSLQRNFCSHLLSVSTSLASGVSQTVQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREILHTDFLTPPVLKESMQVLEKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSITGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVSCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIVSISGKGRLKIGEINSTKKGKFAVELIRYL 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02112 974 ProSiteProfiles S4 RNA-binding domain profile. 899 959 - -
Gma12g02112 974 PANTHER PROTON PUMP-INTERACTOR 1-LIKE 7 621 - -
Gma12g02112 974 CDD S4 900 954 - -
Gma12g02112 974 Pfam Putative RNA-binding domain in YlmH 805 879 IPR040591 -
Gma12g02112 974 MobiDBLite consensus disorder prediction 462 483 - -
Gma12g02112 974 MobiDBLite consensus disorder prediction 379 416 - -
Gma12g02112 974 MobiDBLite consensus disorder prediction 428 453 - -
Gma12g02112 974 SUPERFAMILY Tropomyosin 243 314 - -
Gma12g02112 974 MobiDBLite consensus disorder prediction 510 532 - -
Gma12g02112 974 MobiDBLite consensus disorder prediction 566 585 - -
Gma12g02112 974 MobiDBLite consensus disorder prediction 26 40 - -
Gma12g02112 974 Gene3D - 728 792 - -
Gma12g02112 974 TIGRFAM PS_II_S4: photosystem II S4 domain protein 729 972 IPR017506 -
Gma12g02112 974 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 7 621 - -
Gma12g02112 974 SMART s4_6 899 959 IPR002942 GO:0003723
Gma12g02112 974 MobiDBLite consensus disorder prediction 510 548 - -
Gma12g02112 974 Gene3D - 800 882 IPR012677 -
Gma12g02112 974 MobiDBLite consensus disorder prediction 1 74 - -
Gma12g02112 974 MobiDBLite consensus disorder prediction 49 68 - -
Gma12g02112 974 Coils Coil 484 531 - -
Gma12g02112 974 Pfam S4 domain 903 945 IPR002942 GO:0003723
Gma12g02112 974 Gene3D - 894 950 IPR036986 GO:0003723
Gma12g02112 974 MobiDBLite consensus disorder prediction 379 483 - -
Gma12g02112 974 Coils Coil 254 302 - -
Gma12g02112 974 SUPERFAMILY Alpha-L RNA-binding motif 758 962 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02112 Gma-Chr12 41898892 41912542 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02112 - - gmx:100793229 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02112 12 41898892 41912542 Gma12g02112 12 41898892 41912542 ECH