Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02105 ATGGACCCTGACGTCATCGAGATTCCTCCCCCAATTCACCACCCTCCGAGATTCCGCGAGCAGAACAAGGTCATTTTGCATGATGTGATTGACATTGATGATGACTCTGAGGATGTAGTGATTATTGGCGAAAAAGTTAACAATAGTAACAAAGGGAAGACTATTGACGCCATTCATGATGATCATCAAGTTGTGAAAACGGCTGATTATACTTACTCTCTGCCTGCTGTGGAAAATTTTGGATCAGTTAGTGGGATTGCATCTTCTAACAATTTCCCTTCTGTGTCAAATAATTTAATCAATATTGATGGTCATGGTTCTGATCTATCATATGACGATGATGACTACTTTGATATTTTGTCGGAAGATTATATGGATGTAGATGAGTATGCTTTATTACAGAAACACTTTGATAATGTGGATATACCTACTGGAATTGAAGCACCTTTTACTTGGTTGCCACCAGACTATGTCGTAGGTTCGAAGAAGACTGGAAATAATACATTGTATCCTTGGCATCATATGCAATCTAATGCTAATAAAAGTCCCATGACACCCTCTTCTCAGCCCTCTTTATCATTAGAGCCAACTAACTCTGAAATTCAAGCATCTTCATGGGGTGCTATTAACATTCCAATCAAAATGGGTAATGTTGATCACTCTTCTGGAGTAGAGTTGTCTTCTCAATATATTTCTGAACCTGCCCCTTCTAAGAAATCAGCTACTTCAAAACTCAGAGGGCGTACTTCAAATGCTTCATTAGGAGTAGAGTCATCTAAGTCTCACTGGTCTTCAGGGCCTTTCCATAGTAAAAAGAAGCCTGCTTCAACATACCATGGTTTTAATTACCATGCAGAGGCCGCGAAGATGCCACATGCAGGTGAGCTGCCATATTGGGGGCAATTTAAAAGTGCTAAGAAGGAAGCTGGCAGTAGCATTTCATCCCTTTCAACTTTCATTGAACATCATGGATCATTGTATCCTCCAGGAATAGAATCAGGAAAACATTGGTGGGAGATTTCTCATAATGCTAAACCATTTTCTACACATCTTAATAATATTCCTAATCATATTTATTATCCATTTGATCCTCTTGTTGCCCATCCTGAGCATGTGTTTGATAACAACTGGGTTCACGATTCTGCCAGAGATGGATTTAATGGAAAAACTGTGGATGGCCCTATTGTGACAATCACAGATGAAGCCAAAGAGGAAATTCTGAGGAAATTCAGAAGTTTTAAACAATTTGACACTGTTGAAGACATTTCAGACCATCACTTTTTTCGCAGTAATTCTTCAATGCATCAGCCTCCCAAGAATTGGGCTAAAAAAATCCAGGAAGAGTGGAGGATTTTGGAGAAGGATTTGCCAGCTTCAATATTTGTCCGAGTTTTTGAGTCAAGGATGGATCTTTTAAGGGCTGTGATTATTGGAGCAGAAGGGACTCCTTATCATGATGGCCTTTTCTTTTTTGATGTTTTCTTTCCAAGTGCCTATCCCAATGTACCGCCGaaagtccactaccactctggaggtcttcggctcaacccaaatctgtatgcttgtggcaaagtatgccttagtctacttaacacctggtccggcagcaaaaatgagaagtggcttccaggcgtttcaacaattctccaggttctggtctctatacaaggtctaatactgaatactaagccttactttaatgaacctggatatgcacacatgagtggttcagcaaatggtgaaaagatgtcttttcagtataatgaggacacattcattctatcattgaggaccatgatgtatatgatacgaaagcctccaaagAATTTTGAGGACTTTGTTAAGGGGCATTTCTGCAGTCGAGCTAGCGATATTCTGGTGGCATGTAAGGCATACATGGAAGGTGCTCAAGTTGGGTGTTTGGTCAAAGGAGGGGTTCAGGATGTTGACGAGGGAGACAGAAGCTGCTCACAGCGATTCAAGGATTCTTTATCCGGATATATGAACATGCTTGTCAAAGAGTTTGCTAAAGTTGGAGCAAAGGACATCGAGAAATTGCTGCCTCCAGCAACAACACCAGTAGTGAACAAGCCATCAGGTTTAAGTATTGCCTGA 2115 0.3452 MDPDVIEIPPPIHHPPRFREQNKVILHDVIDIDDDSEDVVIIGEKVNNSNKGKTIDAIHDDHQVVKTADYTYSLPAVENFGSVSGIASSNNFPSVSNNLINIDGHGSDLSYDDDDYFDILSEDYMDVDEYALLQKHFDNVDIPTGIEAPFTWLPPDYVVGSKKTGNNTLYPWHHMQSNANKSPMTPSSQPSLSLEPTNSEIQASSWGAINIPIKMGNVDHSSGVELSSQYISEPAPSKKSATSKLRGRTSNASLGVESSKSHWSSGPFHSKKKPASTYHGFNYHAEAAKMPHAGELPYWGQFKSAKKEAGSSISSLSTFIEHHGSLYPPGIESGKHWWEISHNAKPFSTHLNNIPNHIYYPFDPLVAHPEHVFDNNWVHDSARDGFNGKTVDGPIVTITDEAKEEILRKFRSFKQFDTVEDISDHHFFRSNSSMHQPPKNWAKKIQEEWRILEKDLPASIFVRVFESRMDLLRAVIIGAEGTPYHDGLFFFDVFFPSAYPNVPPKVHYHSGGLRLNPNLYACGKVCLSLLNTWSGSKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYAHMSGSANGEKMSFQYNEDTFILSLRTMMYMIRKPPKNFEDFVKGHFCSRASDILVACKAYMEGAQVGCLVKGGVQDVDEGDRSCSQRFKDSLSGYMNMLVKEFAKVGAKDIEKLLPPATTPVVNKPSGLSIA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02105 704 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 19 689 - -
Gma12g02105 704 SUPERFAMILY UBC-like 425 607 IPR016135 -
Gma12g02105 704 Pfam Ubiquitin-conjugating enzyme 445 573 IPR000608 -
Gma12g02105 704 SMART ubc_7 443 600 - -
Gma12g02105 704 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 19 689 - -
Gma12g02105 704 MobiDBLite consensus disorder prediction 171 198 - -
Gma12g02105 704 Gene3D Ubiquitin Conjugating Enzyme 399 682 IPR016135 -
Gma12g02105 704 MobiDBLite consensus disorder prediction 229 270 - -
Gma12g02105 704 CDD UBCc 443 569 IPR000608 -
Gma12g02105 704 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 440 600 IPR000608 -
Gma12g02105 704 MobiDBLite consensus disorder prediction 229 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02105 Gma-Chr12 41817273 41824430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02105 408 690 Miscellaneous Gene Families AT2G33770 52.281 1.50e-89 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02105 K10581 - gmx:100809853 1392.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02105 12 41817273 41824430 Gma12g02105 12 41817273 41824430 ECH