Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02043 ATGCCTGAGGCTCCTAGAGACTCCACCAAAGACTATGTTCTTGAAGAGAAGAACAAGAAGATTCTGGACTTCATAGAGGACGTGACCAACAACGCAGATGAAGTCCAGAATAAGGTTCTCTCTGAAATTCTGTCCCGCAATGCAAACGTTGAGTACTTGCGGCGACACGGTGTCAACGGCCAAACCGTCGACCGTGACACCTTCAAGAGGCTTCTCCCTGTCATTACCTACGAGGACATCCAACCAGACATCAACCGCATCGCCAATGGTGACAAATCTCCCATCCTTACCACAAAACCTATCACAGAGTTTCTCACCAGCTCTGGCACATCAGGGGGTGAGAGAAAGTTGATGCCAACAATTGAGGAGGAGCTAGGGAGGAGGTGTATATTATACAGCCTCTTGATGCCAATAATGAGCCAATTTGTCCCCGACCTAGAAAAGGGCAAAGGAATGTACCTAATGTTCATAAAATGCGAGTCCAAAACCCCCGGAGGCATAGTGGCTCGCCCAGTCCTCACAAGCTATTACAAAAGCCCTTACTTTAGGGACAGACCCTATGATCCATACACAAAGTACACAAGCCCAAATGAGACCGTCCTATGCCCAGATTCCTACCAAAGCATAGGTTCAAGAGTAGGTGCCATATTTGCCTCTGGCTTCATCCGTGCCATTAGGTTCCTTGAAAAACATTGGACCCTTTTATGCAATGACATCAAAACAGGAACCATCAACAACTCAATCACTGATTCATCAGTGAGAGAGGCTGTGATGAGGATCCTCAAGGCTGATCCTAAGCTTGCGGATTTTATCCACAATGAGTGTAGCAAAGGGTCATGGCAGGGGATTATTACTAGGCTTTGGCCCAATACAAAGTATGTGGACGTTATTGTGACGGGGACTATGGCACAATATATACCCACTTTGGATTACTATAGCAATGACCTCCCACTTGTGTGCACCATGTATGCTTCTAGTGAGTGTTATTTTGGGGTCAACCTCAACCCTCTTTGCAAACCTAGCCAAGTGTCTTACACCCTTATCCCCACCATGTGCTACTATGAATTCTTACCGGTTAATCGAAGCAACAATGAGCTTGCTGTTTCAAGACCTTCACCAACTTCTCTCAATCAGGCACAACATGAAGAATTGGTGGAGCTTGTTGATGTCAAGCTTGGCCAAGAATATGAGCTTGTTGTTACAACTCATGCTGGACTTTATAGGTACAGAGTGGGAGATATACTAAGGGTATCAGGATTCAAGAACAAGGCCCCTCAATTCAGCTTTGTTTGTAGAAAGAATGTTGCCCTGAGCATAGATTCTGACAAAACTGATGAGGTTGAGCTTCAGAACGCAATGAAAAATGCAGTGACACACTTGGAGCCATTTGATGCACACGTGAGTGAGTACACAAGCTATGCAGACACCACCACAATCCCGGGTCACTATGTGTTGTACTGGGAGCTCAACCTCAAAGGGTCAACCCCTATCCCACCTTGTGTGTACGAGGATTGTTGCTTAACCGTTGAGGAGTCGCTCAACAGCGTGTATCGCCAAGGGCGTGTGTCAGATAAATCAATAGGGGCCCTTGAGATCAAGATTGTGGAACAAGGCACCTTTGACAAACTCATGGACtga 1638 0.4615 MPEAPRDSTKDYVLEEKNKKILDFIEDVTNNADEVQNKVLSEILSRNANVEYLRRHGVNGQTVDRDTFKRLLPVITYEDIQPDINRIANGDKSPILTTKPITEFLTSSGTSGGERKLMPTIEEELGRRCILYSLLMPIMSQFVPDLEKGKGMYLMFIKCESKTPGGIVARPVLTSYYKSPYFRDRPYDPYTKYTSPNETVLCPDSYQSIGSRVGAIFASGFIRAIRFLEKHWTLLCNDIKTGTINNSITDSSVREAVMRILKADPKLADFIHNECSKGSWQGIITRLWPNTKYVDVIVTGTMAQYIPTLDYYSNDLPLVCTMYASSECYFGVNLNPLCKPSQVSYTLIPTMCYYEFLPVNRSNNELAVSRPSPTSLNQAQHEELVELVDVKLGQEYELVVTTHAGLYRYRVGDILRVSGFKNKAPQFSFVCRKNVALSIDSDKTDEVELQNAMKNAVTHLEPFDAHVSEYTSYADTTTIPGHYVLYWELNLKGSTPIPPCVYEDCCLTVEESLNSVYRQGRVSDKSIGALEIKIVEQGTFDKLMD 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02043 545 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 11 545 IPR004993 -
Gma12g02043 545 PANTHER - 11 545 - -
Gma12g02043 545 Pfam GH3 auxin-responsive promoter 25 545 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02043 Gma-Chr12 41053671 41056928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02043 14 545 EF-hand Containing Proteins AT1G23160 46.751 8.31e-175 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02043 K14487 - gmx:100797120 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02043 12 41053671 41056928 Gma12g02043 12 41053671 41056928 ECH
Gma13g02513 13 40054245 40057421 Gma12g02043 12 41053671 41056928 GST