Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g02017 ATGCAAGTGCGTTACTCCtacgttcgaagactatgctctgtgctcggttcaccttcagccaaacgcggcactaccaaaactcaatcttcttcttcttctttagccaagttattcgtcgatgacgattccacgctgtcaagcctcaagcttaagcgaccctctgattcaggtgattcgtctaatggggtgtttaagcatatttcttctattttctatgCTGATAAGTCGGCCAAGAAACCTGATTCTGAGGAAATTGATGGAGAAAAGAAGTTTGAAAACATGTCAAATCTATCATGGTTGTCAAGTGTATCTCAAAGCAATGTATTACTACAATGGAAAGAGCAATCTCGTAAAAAGAAACAAAAATGTGTGTTTGACTTCACTCAAGAAAGCCGTTTTCAGAAGTTAGTTGAAGTCTGCGCAAGGATACTAGGACCAGAGGCTACCATTGAGTTGTTTGGTAAAGTGGGACGAGAACCAGATGTGAAAGGATACAATACATTGGTAGAAATGTGCATAGATAAAGCCAGGGGAACTGATGACAAAGACATTGCAATACAAGAACTGGGGAAGGTTTTTAACCTTTTCAAATCAATGAGGGAACAAGGTTTAGAGTTACAAGAGCAAACATATCGCCCCCTTCTTTTGTATCTGATTGACATGTGTATGGTTGAGGAATTTCAATTTTTCTGTGTTGTTATCGAAGATGAGAATCCCAGTTCAGTTGCAAGACTGGGTTACTATGAAATGTTGATGTGGTTAAAAGATAATAACGAAGAAAAGATTCAAGGTATTTGTGACAATATTGCAGAGAATAAAGGTGAAGATACATCTGATATACAAGAAAATTATTTATTAGCTCTTTGTGAAAGTGAACGGATGGAGGAGATTTTGAAGCTACTGGAAATCATAGACATAAAAAACCTTTCATCTGCTGAATCAGTAGCAAAGGTATTTCAAGCATTAGGAAGATTACTATTGGAACCTGTAGCGGAGAAGTTCCTTTTAGACTTCAAAACAAGTGATCATGAAGCAGATAATATTACAGACTTCATTGCTAGTTATGCTGTTAGCATTCCAGATTTATCAGTTAAGGATGTCATAAAAAAATTCAAAGATTTGCACCAAAGACTAGAAGTTTCACCATCATCCTCCTCATACGAGAAGCTCATTTTACATAGCTGTGCATTGCTCAAGGTACATGTGGCGCTTGATATTGTCGATGAAATGTGTGAAGCAGGCTTGACTCTATCAACCAAGGTGTTACACTCAATATTACAAATTTGTGATGATACATCTGAATATAATTTGGTCCATCGAATCTTCTCAACCATACATCGCTACAATTTGGAATCAAATGATGAAACATTCAGATCTATGATAGACTTGTTCTTGAAGATGAAAGATATTGAAGGTGCATATAAGATGCTTGATGATTTGGGGAAATTAAATTTGAAGCCATCACCGGGGATGTACAATGCTATATTGGAAGAATGTTTTCGAGAGAAAAACATCAGTGATGGGGTGAGGGTTCTTGAGCACATGCAATGTGCTGATGTAAAGCCTGATTCACAGACTTTCAGCTACCTGATTAGCAACTCTGAAACTGAAGAGGATATAGTGAAGTATTATGAAGAACTGAAGCAATCTGGAATCGTAGCTACAAAGCAAATTTTCATGGCACTTGTAAATGCTTATGCTGCTTGCGGACAGTTGGAGAAAGCAAAAAAGGTAATCTTAGATCCATTGATACCACCAAAGAGCTTGAACCAAATCAAGGGTTTTCTTGTCTCAGTACTTGCATCACATGGGAAATTGTCTGAGGCTCTAGTTATTTATGAGGAAATCAAGCAATCTGGACACAAGCTGGAGGCAAAAGAAGTTACGAGTCTCATTGAGCACACTCATTCCGAGGGAGAGTTGGATAGGTTGCTTCTGCTACTTAAGGAATTGGATGATACAGACTATTGGAATGATGCTTGCTGCAGAATCATCTTGTATTGCATTTGGAATAAGCATTTAAGTTCTGCTGTTGAATTGTGTAATCTGCTCAAGGATAAGTTCCAAAGTGACGAGCAAGTTATGGAATTTCTCTTTGATAAGGTATTTTCTCTGATTGAAGAGTCAGAAGAGTCCAGTCATTTGCACACTTGCTCCGAGTTGCTTTCGGAAATCAAGGATAAGCTTGGGCTTTTGCCTTCACACAAACGTCATGATTCTCTGCTATGTGCTTGTGCTAATGCCACTGATTTGCATGATTCTGAATGA 2268 0.3457 MQVRYSYVRRLCSVLGSPSAKRGTTKTQSSSSSLAKLFVDDDSTLSSLKLKRPSDSGDSSNGVFKHISSIFYADKSAKKPDSEEIDGEKKFENMSNLSWLSSVSQSNVLLQWKEQSRKKKQKCVFDFTQESRFQKLVEVCARILGPEATIELFGKVGREPDVKGYNTLVEMCIDKARGTDDKDIAIQELGKVFNLFKSMREQGLELQEQTYRPLLLYLIDMCMVEEFQFFCVVIEDENPSSVARLGYYEMLMWLKDNNEEKIQGICDNIAENKGEDTSDIQENYLLALCESERMEEILKLLEIIDIKNLSSAESVAKVFQALGRLLLEPVAEKFLLDFKTSDHEADNITDFIASYAVSIPDLSVKDVIKKFKDLHQRLEVSPSSSSYEKLILHSCALLKVHVALDIVDEMCEAGLTLSTKVLHSILQICDDTSEYNLVHRIFSTIHRYNLESNDETFRSMIDLFLKMKDIEGAYKMLDDLGKLNLKPSPGMYNAILEECFREKNISDGVRVLEHMQCADVKPDSQTFSYLISNSETEEDIVKYYEELKQSGIVATKQIFMALVNAYAACGQLEKAKKVILDPLIPPKSLNQIKGFLVSVLASHGKLSEALVIYEEIKQSGHKLEAKEVTSLIEHTHSEGELDRLLLLLKELDDTDYWNDACCRIILYCIWNKHLSSAVELCNLLKDKFQSDEQVMEFLFDKVFSLIEESEESSHLHTCSELLSEIKDKLGLLPSHKRHDSLLCACANATDLHDSE 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g02017 755 Pfam PPR repeat 559 579 IPR002885 -
Gma12g02017 755 Pfam PPR repeat 596 620 IPR002885 -
Gma12g02017 755 Gene3D Tetratricopeptide repeat domain 363 540 IPR011990 GO:0005515
Gma12g02017 755 Gene3D Tetratricopeptide repeat domain 128 333 IPR011990 GO:0005515
Gma12g02017 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Gma12g02017 755 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Gma12g02017 755 PANTHER OS02G0132600 PROTEIN 65 754 - -
Gma12g02017 755 Pfam Pentacotripeptide-repeat region of PRORP 392 548 IPR033443 -
Gma12g02017 755 PANTHER OS02G0132600 PROTEIN 65 754 - -
Gma12g02017 755 TIGRFAM PPR: pentatricopeptide repeat domain 491 524 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g02017 Gma-Chr12 40824991 40837418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g02017 331 656 Glycosyltransferase AT1G05670 20.475 4.82e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g02017 - - gmx:100306302 1433.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g02017 12 40824991 40837418 Gma12g02017 12 40824991 40837418 ECH
Gma13g02541 13 40274272 40275865 Gma12g02017 12 40824991 40837418 GST