Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01832 ATGGCTTCCACAGCCTCTTCGCTCCTCCGAGCTTCTAGGTCCAAACTTTCTTCTTCCTCCTCCGCTTCTCTATCTAGAACCTTCGCTCGCTCCGCTCCTCGTCGATCCCCCGGCTCCTCCGCCGCCGCCACCCGCTCCTTCGGCTCCGCCGTCCCGCGATGGAGCCGCGGCGTCGACTGGCGCTCTCCTCTCGGCCTCCGCCCTCATATTAGAGCCGCCGCTCCCCTCATCGAACGCTTCCACCGCAGAATCGCCACTAGCGCTACTGAGAATCCTTTCAAGGGAAACCTCACGAGTCTCCCTAGGCCTGGTGGTGGCGAGTTTGGAAAGTTCTACAGCCTTCCGTCGCTCAACGATCCGAGAATCGATAGGTTGCCATACTCTATCAGAATTCTCCTTGAATCTGCAATTCGTAATTGTGACAATTTCCAAGTTAAAAAGGAAGATGTTGAGAAGATTATTGACTGGGAAAACTCTTCAGTGAAGCAAGTTGAGATTCCTTTCAAGCCTGCTCGTGTTCTACTGCAGGATTTTACTGGAGTCCCTGCTGTTGTTGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGCAGTGATTCTAATAAGATTAATCCTCTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTTCAAGTTGATGTAGCAAGGTCAGAGAATGCAGTGCAGGCCAATATGGAGCTTGAGTTCCAGAGAAACAAGGAGAGATTTGCTTTTCTGAAATGGGGGTCAAATGCTTTCCGTAATATGCTTGTTGTCCCTCCTGGTTCGGgtatagtacatcagGTTAATCTTGAATATCTTGGACGTGTTGTTTTCAACACTGAGGGCTTGCTCTATCCTGACAGTGTGGTTGGAACTGATTCACATACAACAATGATAGATGGGCTTGGAGTTGCTGGATGGGGTGTTGGTGGTATTGAAGCAGAGGCAGCAATGCTTGGTCAGCCTATGAGCATGGTGTTACCTGGTGTTGTTGGGTTCAAGTTATCTGGAAAACTGCGCAATGGTGTTACAGCAACTGACTTGGTTCTAACTGTGACACAAATGCTTAGGAAACATGGTGTTGTAGGGAAATTTGTTGAATTTTATGGTGATGGTATGGGTGAGTTATCATTAGCTGACAGGGCCACTATCGCCAACATGTCTCCTGAATATGGTGCAACCATGGGCTTCTTCCCTGTAGACCACGTTACATTACAATACCTCAAATTAACTGGAAGAAGTGATGAGACTGTGACAATGATAGAGGCCTATCTCAGGGCAAACAAATTGTTTATTGACTATAATGAGCCTCAACCGGACAGAGTTTATTCATCCTATCTTGAATTGAACCTTGACGAAGTTGAACCATGCATCTCAGGACCCAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGATTGGCATGCTTGTCTAGACAACAATGTGGGATTTAAGGGATTTGCTATACCAAAAGACGTACAAGGCAAAGTTGCAAAATTTGATTTCCATGGGCAGCCAGCAGAGCTGAAGCATGGCAGTGTTGTGATTGCTGCAATCACAAGTTGTACAAATACATCAAACCCAAGTGTTATGCTTGGGGCTGGTCTTGTAGCAAAGAAGGCACATGATCTAGGTTTGCAGGTTAAGCCATGGGTGAAAACGAGTCTTGCTCCTGGCTCTGGAGTTGTTACAAAATATCTACTTAAAAGTGGCCTGCAAAAGTATCTAAATGAACAGGGTTTCAACATTGTTGGATTTGGCTGTACCACATGTATTGGCAATTCAGGGGAACTAGACCAATCTGTTGCTTCTGCTATCTCTGAAAATGACATTGTAGCTGCTGCTGTGTTGTCCGGGAACCGTAATTTTGAGGGGCGTGTGCATCCCTTGACAAGAGCTAACTACCTAGCCTCACCACCTCTAGTTGTTGCTTATGCTCTTGCTGGGACAGTTGACATTGACTTTCAAAAGGAGCCAATAGGAACAGGGAAGGATGGAAAGAATGTTTACTTAAGGGATATCTGGCCATCCACTCAAGAAATTGCAGAGGCTGTCCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAAGCTATTACCAAAGGTAACACTATGTGGAACCAACTACAAGTTCCTGCTGAGACCCTGTACTCATGGGACCCCAAGTCAACATATATTCATGAACCTCCATACTTCAAGGGCATGACCATGGATCCTCCTGGAGCTCATGGTGTGAAAGATGCCTATTGTCTGCTGAATTTTGGTGACAGTATAACGACCGATCACATTTCTCCTGCTGGTAACATTAACAAGGATAGTCCTGCTGCAAAATACCTTCTGGAGCGAGGTGTGGAACAAAAGGACTTCAACTCTTATGGAAGTCGTCGTGGCAATGATGAAGTGATGGCAAGGGGAACTTTTGCCAACATTCGTCTTGTTAACAAGCTCTTGAATGGAGAAGTTGGCCCCAAGACAGTTCACATTCCGACTGGGGAGAAGCTTTATGTGTTTGATGCAGCCCAGAGATACAAGGCTGAAGGGCAGGACACCATTGTGCTGGCTGGAGCTGAATATGGTAGTGGAAGTTCCAGAGATTGGGCTGCCAAGGGTCCCATGCTATTGGGTGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGTAGCAATTTGGTAGGAATGGGTATTGTTCCTCTTTGCTTTAAATCTGGTGAGGATGCTGACACATTGGGATTGACTGGTCACGAACGTTATACTATTGACCTCCCAAGTAACATCAGCGAGATAAGGCCTGGCCAAGATGTCACCGTAACAACTACTACCGGAAAATCTTTCACCTGCACAGTTCGCTTCGACACCGAGGTGGAACTTGCTTACTTTAACCATGGGGGCATTCTTCCATATGTCATCAGGAACCTCATTAAGCAGTGA 2955 0.4616 MASTASSLLRASRSKLSSSSSASLSRTFARSAPRRSPGSSAAATRSFGSAVPRWSRGVDWRSPLGLRPHIRAAAPLIERFHRRIATSATENPFKGNLTSLPRPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSSVKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSNAFRNMLVVPPGSGIVHQVNLEYLGRVVFNTEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVTMIEAYLRANKLFIDYNEPQPDRVYSSYLELNLDEVEPCISGPKRPHDRVPLKEMKADWHACLDNNVGFKGFAIPKDVQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHDLGLQVKPWVKTSLAPGSGVVTKYLLKSGLQKYLNEQGFNIVGFGCTTCIGNSGELDQSVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFQKEPIGTGKDGKNVYLRDIWPSTQEIAEAVQSSVLPDMFRSTYEAITKGNTMWNQLQVPAETLYSWDPKSTYIHEPPYFKGMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGNINKDSPAAKYLLERGVEQKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHIPTGEKLYVFDAAQRYKAEGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIVPLCFKSGEDADTLGLTGHERYTIDLPSNISEIRPGQDVTVTTTTGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLIKQ 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01832 984 Pfam Aconitase C-terminal domain 783 910 IPR000573 -
Gma12g01832 984 PRINTS Aconitase family signature 233 246 IPR001030 -
Gma12g01832 984 PRINTS Aconitase family signature 257 265 IPR001030 -
Gma12g01832 984 PRINTS Aconitase family signature 286 299 IPR001030 -
Gma12g01832 984 PRINTS Aconitase family signature 300 315 IPR001030 -
Gma12g01832 984 PRINTS Aconitase family signature 362 375 IPR001030 -
Gma12g01832 984 PRINTS Aconitase family signature 376 389 IPR001030 -
Gma12g01832 984 PRINTS Aconitase family signature 458 472 IPR001030 -
Gma12g01832 984 PRINTS Aconitase family signature 523 534 IPR001030 -
Gma12g01832 984 PRINTS Aconitase family signature 585 598 IPR001030 -
Gma12g01832 984 Pfam Aconitase family (aconitate hydratase) 151 654 IPR001030 -
Gma12g01832 984 CDD AcnA_IRP 172 656 - -
Gma12g01832 984 Gene3D Aconitase, domain 4 747 983 IPR015928 -
Gma12g01832 984 PANTHER ACONITATE HYDRATASE 55 984 - -
Gma12g01832 984 ProSitePatterns Aconitase family signature 1. 519 535 IPR018136 -
Gma12g01832 984 ProSitePatterns Aconitase family signature 2. 585 598 IPR018136 -
Gma12g01832 984 SUPERFAMILY LeuD/IlvD-like 723 982 - -
Gma12g01832 984 Gene3D - 683 744 - -
Gma12g01832 984 Gene3D Aconitase, domain 3 90 458 IPR015931 -
Gma12g01832 984 Gene3D Aconitase, domain 3 459 682 IPR015931 -
Gma12g01832 984 MobiDBLite consensus disorder prediction 1 44 - -
Gma12g01832 984 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 55 984 IPR006249 -
Gma12g01832 984 SUPERFAMILY Aconitase iron-sulfur domain 105 719 IPR036008 -
Gma12g01832 984 CDD AcnA_IRP_Swivel 760 930 IPR044137 -
Gma12g01832 984 TIGRFAM aconitase_1: aconitate hydratase 1 109 982 IPR006249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01832 Gma-Chr12 38967918 38975471 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01832 K01681 - gmx:100794803 1902.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01832 12 38967918 38975471 Gma12g01832 12 38967918 38975471 ECH
Gma13g02732 13 41912929 41920035 Gma12g01832 12 38967918 38975471 GST
Gma12g01832 12 38967918 38975471 Gma12g00884 12 8710172 8718861 PCT
Gma06g02716 06 50899036 50908721 Gma12g01832 12 38967918 38975471 PCT