Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01814 ATGGCTAATCAAAACACTCTCCCTCTTTATGATAAATATTGGGTGAAGCATACGTTATCAAGAGTAATGGATTCCTTGACTCTGCTCCTCCTCCTCTTACTTCTTGGTTACCGTATTAATATTTTCTCTCATAGCAACTACACTTTCCCTTGCCTTGTTGCTTTCATATGCGAGTCATGGTTCACTTTTTCTTGGATTCTCGTCATCAGCACTAAATGGTCTCCTGCATATACCAAAACCTACATACACCGTCTCTTGCTTCGGGTACCTGAGGGTGAGCTTCCAGCAGTGGATCTATTTGTGACAACAGCAGACCCAGTGCTTGAGCCTCCTATCATCACAATCAACACTGTCTTGTCTCTCTTGGCGCTTGATTATCCTCATAACAAACTTGCTTGCTATGTTTCTGATGATGGATGCTCCCCTCTTACCTTCTATGCCCTTATCGAAGCATTTCAATTTGCTAAGCTTTGGGTACCTTTCTGTAAGAAGTACAACATACAACTTAGAGTACCCTTCAGATACTTCTCCAATAACACCAGCACTGACAACAATGAAGACACGCCGGAGTTTATGCAAGACTGGTTAAAAATGAAGAACGAGTATGAGCGCCTTACCCGTAAAATTCTGAATGCAACAAAAAATTCGATTCCACTTGTGGGAGAGTTTGCTATCTTCTCAGATACACAGCCTAGAAATCATCCAACCATAATTAAGGTAATATGGGAAAACAAAGAAGGTCTTTCAGACGAGTTGCCTCACTTAATCTACGTATCTAGAGAAAAGAAGCAGGAACATCCACATCAATATAAAGCTGGTGCTATGAATGTGTTGACAAGAGTCTCTGGAGTGATGACAAATGCACCCTTTATCCTAAACTTAGATTGTGACATGCACGTGAATAATCCAAAGATTGTTCTACACGCCCTGTGCATTTTATTAGATTCAAAGGGAGAAAAAGAAGTTGCATTTGCCCAATGTATCCAGCAATTCTATGATGGATTAAAGGATGATCCTCTCGGAAATCAGCTTGTGGCAGCGTTTCGGTACTTGGGGGGTGGATTAGCAGGGCTCCAAGGGATATTTTACTTAGGAACAAATTGCATGCACAGAAGAAAAGTAATTTATGGCCTTTCTCCTTATCATGGCATTCAAAATGGAAAGAAGGATCATGGCGTCTCCAATGGGAAATTCTCAGAAAAGAAAACAATATTTGGTACATCAAAGGGGTTTGTGGAATCAGCTACTCATGCTTTGGAAGGGAAGACATTTACTCCCAATAACAATATTTGCAAATCTCTTGAGGCTGCGAGTGAAGTTTCTAGTTGTGAATATGAATACGGCACTGCTTGGGGAAAACAGGTGGGTTGGATGTATGGATCAACATCTGAAGATTTACTTACCGGACTGAAAATCCACACAAAAGGTTGGAGATCTGAAGTGTGCTCACCAGAACTTTCGCCTTTTATGGGATGCTCACCTCAAGATATTTTAGTTGTAATTGGTCAACAAAAGAGATGGATCTCAGGGTTGCTTGATATCCTCCTAAGCAAGCATTGTCCAATTTTTGGAACCCTATTTGGTAAGCTCCAATTCAGACAATGCTTGGGGTATCTTTGGATCACTACTTGGAGCTTACGACCCGTTCCTGAAATATGTTATGCTGCTCTCCCTGCCTATTGCATCATTAATAACTCCAGTTTCTTGCCCAAGGAACTCGGACAATGGATCCCCGCCACTTTGCTTGTGATTTACAACGTGTCTACTCTTTTAGAGAACTTGAAAATAGGATTGTCAATTCGAACATGGTGTAACAATCAACGAATGGCAAGGATAACCACCATGAATTCTTGGTTTTTTGGATTTTTGGCCATCCTACTTAAGCGATTAAGGATATCTAACATTGGCTTTGAAATAACAAGGAAAGACGAAACATTTTCCAATGAGGGTGCAAATGAAAATGATGGTAGATTCATTTTTAACAAGTCTCCAGTTTTTATACCTGGCACAACTATTTTGCTTATTCAACTCACAGCACTGGTTACCATGTGGTTGGGATGGCAACCACCTGTTAGAAACAATGGACATGGATCTGGTGTTGGGGAAGTGTTCTGTAGTACATATTTGGTTGTGTGCTATTGGCCATTTTTGAAAGGGTTATTTGAGAAAGGAAAGATACCTGAACTTCCATGGATGGATCTATTTGTGACAACGGCAGATCCGATTCTTGAGCCACCCATCATCACAGTCAACACTTTATTGTCTCTTTTGGCCCTAGATTACCCTGCAAACAAAGCACCCTTTTTATACTTCTCCAAAGAGGCCAATGAAGATTCGCTAGAATTTAGACAAGAATGGTTAAGAGTGAAGGACGAGTATGGAGAACTTACCCTTAAAATTGAAAATACAGCTACAAAACCGAATCTGTTTCAGCCTGTTGGAGAGCATGCAGAGTTCTCCAAAGCACAGCCAACAAATCATCCTACCATACTTAAGTACGTAGCAAGTGGATTTGCAGGACTTCAAGGAATTATGTACTCGGGGACAAATTGTTTTCTTAGAAGAAAAGTTATTTATGGCCTTTCTCCTGGTCACGATATTCAAATTGGAAAGGAGGGTCTTGGTTTCACCAATGGGAAGACATTTGCTAGCATTGATAACCTTGGCAATGTTGATCTTGAGGCAGCGAACCAAGTTGCTAGTTGTGCATTCGAACGCAACACTGCCTGGGGTCAAAAGGTGGGCTACATAGTGGGTCCCCCTCTCTACTGGCACTTCATTGAACACGTCAACCACTCTTCTTCATCTTCTTCTTGCGCTCCTTGCGTCTGCGATTGCTCTTCTCAACCCATCATTACGATTCCCCAAGGACTTAGCAACTCTTCATTTGAAGGTTGGTTTCTGGTTTCCTGA 2913 0.4137 MANQNTLPLYDKYWVKHTLSRVMDSLTLLLLLLLLGYRINIFSHSNYTFPCLVAFICESWFTFSWILVISTKWSPAYTKTYIHRLLLRVPEGELPAVDLFVTTADPVLEPPIITINTVLSLLALDYPHNKLACYVSDDGCSPLTFYALIEAFQFAKLWVPFCKKYNIQLRVPFRYFSNNTSTDNNEDTPEFMQDWLKMKNEYERLTRKILNATKNSIPLVGEFAIFSDTQPRNHPTIIKVIWENKEGLSDELPHLIYVSREKKQEHPHQYKAGAMNVLTRVSGVMTNAPFILNLDCDMHVNNPKIVLHALCILLDSKGEKEVAFAQCIQQFYDGLKDDPLGNQLVAAFRYLGGGLAGLQGIFYLGTNCMHRRKVIYGLSPYHGIQNGKKDHGVSNGKFSEKKTIFGTSKGFVESATHALEGKTFTPNNNICKSLEAASEVSSCEYEYGTAWGKQVGWMYGSTSEDLLTGLKIHTKGWRSEVCSPELSPFMGCSPQDILVVIGQQKRWISGLLDILLSKHCPIFGTLFGKLQFRQCLGYLWITTWSLRPVPEICYAALPAYCIINNSSFLPKELGQWIPATLLVIYNVSTLLENLKIGLSIRTWCNNQRMARITTMNSWFFGFLAILLKRLRISNIGFEITRKDETFSNEGANENDGRFIFNKSPVFIPGTTILLIQLTALVTMWLGWQPPVRNNGHGSGVGEVFCSTYLVVCYWPFLKGLFEKGKIPELPWMDLFVTTADPILEPPIITVNTLLSLLALDYPANKAPFLYFSKEANEDSLEFRQEWLRVKDEYGELTLKIENTATKPNLFQPVGEHAEFSKAQPTNHPTILKYVASGFAGLQGIMYSGTNCFLRRKVIYGLSPGHDIQIGKEGLGFTNGKTFASIDNLGNVDLEAANQVASCAFERNTAWGQKVGYIVGPPLYWHFIEHVNHSSSSSSCAPCVCDCSSQPIITIPQGLSNSSFEGWFLVS 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01814 970 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 5 726 - -
Gma12g01814 970 Pfam Protein of unknown function (DUF1068) 914 964 IPR010471 -
Gma12g01814 970 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 833 881 - -
Gma12g01814 970 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 765 834 - -
Gma12g01814 970 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 727 765 - -
Gma12g01814 970 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 833 881 - -
Gma12g01814 970 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 890 919 - -
Gma12g01814 970 Pfam Cellulose synthase 732 767 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma12g01814 970 Pfam Cellulose synthase 97 389 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma12g01814 970 Pfam Cellulose synthase 402 727 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma12g01814 970 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 196 384 IPR029044 -
Gma12g01814 970 SUPERFAMILY Nucleotide-diphospho-sugar transferases 111 517 IPR029044 -
Gma12g01814 970 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 890 919 - -
Gma12g01814 970 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 765 834 - -
Gma12g01814 970 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 5 726 - -
Gma12g01814 970 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 727 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01814 Gma-Chr12 38726831 38742926 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01814 725 834 Glycosyltransferase AT2G32530 33.775 3.42e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01814 - - gmx:100780817 1488.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01814 12 38726831 38742926 Gma12g01814 12 38726831 38742926 ECH
Gma12g01814 12 38726831 38742926 Gma06g02733 06 51119801 51129707 PCT