Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01504 ATGGCCAACAGCAACCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTGCTCAGTGAGCCAGCACCAGGAATTAGTGCCTCCCCTTCTGAAGAGAATATGCGATATTTCAATGTGATGATCCTTGGGCCAACCCAGTCGCCTTATGAAGGAGGAGTTTTCAAGTTAGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGGTTAGGTTTCTAACAAAAATATATCATCCAAACATTGATAAGCTTGGCAGGATTTGTCTTGATATTCTGAAAGATAAGTGGAGTCCTGCCCTTCAGATCCGCACTGTTCTACTAAGCATTCAAGCTCTATTAAGTGCACCAAACCCAGATGATCCACTTTCTGAGAACATTGCCAAGCATTGGAAATCTAATGAGGCTGAGGCTGTCGAAACAGCGAAGGAATGGACCCGATTATATGCTAGTGGCGTCTGA 462 0.4416 MANSNLPRRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGV 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01504 153 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Gma12g01504 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 150 - -
Gma12g01504 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 - -
Gma12g01504 153 SMART ubc_7 8 151 - -
Gma12g01504 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Gma12g01504 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Gma12g01504 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Gma12g01504 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Gma12g01504 153 CDD UBCc 7 146 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01504 Gma-Chr12 32144431 32151172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01504 8 118 Miscellaneous Gene Families AT3G17000 29.915 4.07e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01504 K10580 - gmx:100804355 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01504 12 32144431 32151172 Gma12g01504 12 32144431 32151172 ECH
Gma13g02401 13 38755323 38759075 Gma12g01504 12 32144431 32151172 PCT
Gma12g01504 12 32144431 32151172 Gma13g02401 13 38755323 38759075 PCT