Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01480 ATGGAGAACCCAATCGACGGTGGCGAGTTCGTGTACCTTTCCGGGTTCGGCAACCACTTCTCCTCCGAGGCCCTCGCCGGAGCTCTGCCGGTGGCGCAGAACAGCCCCCTCGTCTGCCCGTACGGCCTCTACGCCGAGCAAATCTCTGGCACCTCCTTCACCTCCCCTCGCAACCGCAACCTCTTCAGTTGGTTTTATCGGATCAAGCCATCGGTGACTCACGAACCGTTCAAGCCTAGGGTACCTGGTAATGGCAGAATTTTGAGTGAGTTTAACAACTCCAACAGTTCTGCTAACCCAACTCAGCTTAGATGGAAGCCCTTGGATGCGCCCGATTCGCCAACAGATTTCATTGATGGGTTGTCCACTGTGTGTGGTTCTGGCAGCTCCTTCATGCGCCACGGATATGCTATTCACATGTACACTGCCAACAAATCAATGGACAATTGTGCCTTTTGCAATGCTGATGGTGACTTCTTGATAGTTCCCCAACAAGGAAGACTCCTTGTCACTACTGAATGTGGAAGGTTGAAAGTTTCTCCAGGTGAAATTGCTATATTACCTCAAGGCTTTCGTTTTTCTGTGAATCTTCCTGATGGTCCATCCCGTGGTTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGCCTTGCTTCCCCTAGGGATTTCCTTGTTCCCACTGCTTGGTTTGAAGATAAATCTTATCCTGGGTACACCATAGTGCAGAAATTTGGTGGTGAGCTCTTTGATGCAGTACAAGATTTCTCTCCTTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATATATGTATGATTTAAACAAATTCTGCCCTTATAATACAGTTCTGTTTGATCATAGTGATCCATCAATCAATACTGTGTTGACAGCACCAACTGATAAACCTGGAGTGGCATTGCTTGATTTTGTCATTTTCCCACCCAGATGGCTGGTTGCTGAGCATACTTTCCGGCCTCCATATTATCATCGCAATTGCATGAGTGAATTTATGGGCCTCATTCATGGTGGTTATGAGGCCAAGGCTGATGGATTTCTTCCCGGTGGTGCAAGTCTCCATAGTTGTATGACTCCCCATGGTCCTGATACCAAGTCATATGAGGCTACCATTGCACGAGGAAATGATGTAGGACCTTGCAAGATCACTGACACAATGGCTTTTATGTTTGAATCGAGTTTGATACCCCGTATCAGTCAATGGGCCTCAGAATCACCGTTCTTGGACCAAGATTATTACCAGTGTTGGATTGGCCTGAAATCTCATTTTGCAGTTACTAAGACGTCTCCTGAAAACCCAAGCTTGGGAAATGGAGATTGA 1368 0.4649 MENPIDGGEFVYLSGFGNHFSSEALAGALPVAQNSPLVCPYGLYAEQISGTSFTSPRNRNLFSWFYRIKPSVTHEPFKPRVPGNGRILSEFNNSNSSANPTQLRWKPLDAPDSPTDFIDGLSTVCGSGSSFMRHGYAIHMYTANKSMDNCAFCNADGDFLIVPQQGRLLVTTECGRLKVSPGEIAILPQGFRFSVNLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLASPRDFLVPTAWFEDKSYPGYTIVQKFGGELFDAVQDFSPFNVVAWHGNYVPYMYDLNKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKADGFLPGGASLHSCMTPHGPDTKSYEATIARGNDVGPCKITDTMAFMFESSLIPRISQWASESPFLDQDYYQCWIGLKSHFAVTKTSPENPSLGNGD 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01480 455 Pfam Homogentisate 1,2-dioxygenase N-terminal 12 284 IPR046452 -
Gma12g01480 455 TIGRFAM hmgA: homogentisate 1,2-dioxygenase 10 439 IPR005708 GO:0004411|GO:0006559|GO:0006570
Gma12g01480 455 SUPERFAMILY RmlC-like cupins 10 440 IPR011051 -
Gma12g01480 455 Pfam Homogentisate 1,2-dioxygenase C-terminal 286 439 IPR046451 -
Gma12g01480 455 CDD cupin_HGO_N 103 211 - -
Gma12g01480 455 Gene3D Jelly Rolls 273 410 IPR014710 -
Gma12g01480 455 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 9 440 - -
Gma12g01480 455 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 9 440 IPR005708 GO:0004411|GO:0006559|GO:0006570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01480 Gma-Chr12 29153133 29158460 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01480 K00451 - gmx:100801346 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01480 12 29153133 29158460 Gma12g01480 12 29153133 29158460 ECH