Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01391 ATGACCCAAGAAGCCGTGGACCACGACCACGAAGAAGACGACACCGAGTCTTGCTTTTTCCAGGACTCCAACGACCGTTTACTCTCCTCTTCTTCCTGCTCCACCTCCACCTCCGACGacgacactcccactccccaaaacgacaccctcactccccacaacgacactAACGCCACCAAAAACATTGCCTCCCTCAATGCCCTCCCACAATTTCCTTTTCCAACTATGTGCAAGTACGACGCCTGGATCTCCGAACCCTCCTCCCTCTCCGAACGCCGCTCCCGCCTCCTCCGCCAGTTCGGCCTCCCCGCACCGCCGCCATCCTCCGCCGCAATCCCCCGATCAGCCTCCTCTCACCATTGCACCGACACTTTCTCCACCACCGCCGCCGCCACGATTCCCCGATCGAAATCCGACAACACCGCGGATCGCGGCACCAAGCATTGCAAGTCCTCGGTTGTTCCAATCCACGACAATGACGACGGTTTTCTAGTAaataataataataataataataataataataataataataataataataataataataataataataataataataatagtaataatCGTGGTCGTGGTGGTTCTGTTTGTGTGAATAATAATAGGATTTGTGTGAGTGTGTATGAGGATGATGATGGTGGTGGCGGAATTGGGGAGGGTAATGTCAATGTCAGTAATGTGGTTGATGAAACTGTGCAAGCGTGTACGATTAGGGATTTGGATAATGGGAAGGAGTTTGTGGTGAAGGAGGATGGGGTGTGGAATGAGGTGAAGGAGGTGGGCACTGGGAGGCGTCTGACAGTGGAGGAGTTCGAGATGACGGTGGGGCATTCACCGATTGTTCAGGAGCTCATGAGGAGGCAGAATGTGGAGGAAGGTGGTAATGGGGAGGGTgtggatggtgatggtggtggtggtggtgttggtggtggtggtggtgatgagggggatggtggCAAGGTGAAGAGGAAAGGGGGCTGGTTTAAGTTTATGAGTTTGAAGAGTGTTGTGGTGGGTCAGAAAGAGAGGCGGAGTGGGGATGAGAGGGATACGTCGTCGTCAGAGAAGGCGGGTGGCCGGAGGTCGAGTTCAGCCACAGATGATAGCCAGGATGGTGGTGGTTTGGTTCATGGGGGTGAGAGAGTGAGGGTTAGGCAGTATGGGAAGTCATTTAAGGAGGTTACAGGGCTTTATAGTAGCCCGAAGATTCAGGCTCATGAGGGATCCATTTGGTGCATTAAGTTTAGTTTGGATGGGAGGTATCTTGCTAGTGCGGGTGAGGATTGCATGATCCATGTTTGGCAGGTTTTTGAGTCAGAGAGGAAGGGCGAGCTGTTGGTGGAGAAACCGGAAGATGGGAATTTGAACATCATGTTTCTTGTGAATGGGTCGCCAGAGCCTTCATCTCCTGGCATGGACAATAATTCGGAGAAGAAGAGAAGGGGGAGGTTGTCAGTTAGCAGAAAATCGTTGAGCTTGGACCAGTTAGTGGTGCCGGAAACTGTGTTTGCACTCACTGAAAAACCTGTTTGCTCCTTTAAGGGCCATCTCCATGATGTGCTTGACCTTTCTTGGTCCAAGTCTCAGCGCTTGCTCTCATCTTCGATGGACAAAACAGTGCGACTGTGGCATTTGTCTAGCAAGTCTTGTCTGAAAATTTTTTCCCACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGTATATGGAGCATTCCTGATCGACAAGTTGTAGATTGGACTGATTTACATGAGATGGTCACTGCTGCTTGTTATACGCCTGATGGTCAGGGTGTGCTAATTGGTACATACAAGGGTCGCTGCCATTTATATTATTCATCTGAAAATAAGTTGCAGCAGAAAAGTCAGATAAATTTGCAGAACAGGAAAAAGAGATCGAACCACAAGAAAATTACTGGCTTCCAGTTTGTTCCTGGAAGTTCATCAGAAGTACTTATCACTTCTTCTGATTCTCGAATTCGACTTGTTGATGGTGTTGATTTGGTTCATAAGTTTAAAGGGTTTCGGAATGCAAATAGCCAAATTTCTGCCTGCCTCACAGCAAATGGTAAATATGTTGTCTCAGCAAGTGAGGATTCTCATGTATACATCTGGAAAAATGAAGCTGATTGCAGACCTAACAGGAGTAAAGGTGTGGCTGTGACAAGCACATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCTTGGCCAGGTATGGATGATACATGGGAGATGCATGATCCATATTTTGCAGAAGAACCTGAGCTTGATGATGATGGGGATGAGGTCTTTTCGGCCAATCATCCTCCTACTCCTGTAGAGGAAAATCTATGTTCTGAGGGTTCCCAATTTGCTTCAGGTTGCAATAGCAGTCCACTTCATGGAACCATTGCAAGTGCTACAGATAGTTATTTTCTTGATAGAATTTCTGCGACATGGCCTGAGGAAAAACTTCTAACTACAAGGGACCGAAGCCCTCAGGTAAGTGTGGATTTATCTAAAGGGGTGAATCAAAACATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCAAGGGGAAATTAAGATTTTCCAAAATTTTGGATTGCCACTTGGTATATAA 2676 0.4417 MTQEAVDHDHEEDDTESCFFQDSNDRLLSSSSCSTSTSDDDTPTPQNDTLTPHNDTNATKNIASLNALPQFPFPTMCKYDAWISEPSSLSERRSRLLRQFGLPAPPPSSAAIPRSASSHHCTDTFSTTAAATIPRSKSDNTADRGTKHCKSSVVPIHDNDDGFLVNNNNNNNNNNNNNNNNNNNNNNNNNNSNNRGRGGSVCVNNNRICVSVYEDDDGGGGIGEGNVNVSNVVDETVQACTIRDLDNGKEFVVKEDGVWNEVKEVGTGRRLTVEEFEMTVGHSPIVQELMRRQNVEEGGNGEGVDGDGGGGGVGGGGGDEGDGGKVKRKGGWFKFMSLKSVVVGQKERRSGDERDTSSSEKAGGRRSSSATDDSQDGGGLVHGGERVRVRQYGKSFKEVTGLYSSPKIQAHEGSIWCIKFSLDGRYLASAGEDCMIHVWQVFESERKGELLVEKPEDGNLNIMFLVNGSPEPSSPGMDNNSEKKRRGRLSVSRKSLSLDQLVVPETVFALTEKPVCSFKGHLHDVLDLSWSKSQRLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGVLIGTYKGRCHLYYSSENKLQQKSQINLQNRKKRSNHKKITGFQFVPGSSSEVLITSSDSRIRLVDGVDLVHKFKGFRNANSQISACLTANGKYVVSASEDSHVYIWKNEADCRPNRSKGVAVTSTYEHFHCKDVSVAIPWPGMDDTWEMHDPYFAEEPELDDDGDEVFSANHPPTPVEENLCSEGSQFASGCNSSPLHGTIASATDSYFLDRISATWPEEKLLTTRDRSPQVSVDLSKGVNQNMSAWGMVIVTAGLQGEIKIFQNFGLPLGI 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01391 891 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 441 - -
Gma12g01391 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 441 IPR001680 GO:0005515
Gma12g01391 891 MobiDBLite consensus disorder prediction 1 57 - -
Gma12g01391 891 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 592 - -
Gma12g01391 891 MobiDBLite consensus disorder prediction 345 361 - -
Gma12g01391 891 MobiDBLite consensus disorder prediction 1 20 - -
Gma12g01391 891 MobiDBLite consensus disorder prediction 162 199 - -
Gma12g01391 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 592 IPR001680 GO:0005515
Gma12g01391 891 MobiDBLite consensus disorder prediction 21 57 - -
Gma12g01391 891 MobiDBLite consensus disorder prediction 467 491 - -
Gma12g01391 891 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 518 552 - -
Gma12g01391 891 SUPERFAMILY WD40 repeat-like 407 728 IPR036322 GO:0005515
Gma12g01391 891 MobiDBLite consensus disorder prediction 111 139 - -
Gma12g01391 891 Gene3D - 398 751 IPR015943 GO:0005515
Gma12g01391 891 MobiDBLite consensus disorder prediction 296 328 - -
Gma12g01391 891 PRINTS G protein beta WD-40 repeat signature 427 441 IPR020472 -
Gma12g01391 891 PRINTS G protein beta WD-40 repeat signature 536 550 IPR020472 -
Gma12g01391 891 PRINTS G protein beta WD-40 repeat signature 578 592 IPR020472 -
Gma12g01391 891 MobiDBLite consensus disorder prediction 344 385 - -
Gma12g01391 891 PANTHER WD REPEAT DOMAIN 44 9 890 IPR040324 -
Gma12g01391 891 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 9 890 - -
Gma12g01391 891 MobiDBLite consensus disorder prediction 140 155 - -
Gma12g01391 891 MobiDBLite consensus disorder prediction 100 199 - -
Gma12g01391 891 Pfam WD domain, G-beta repeat 554 591 IPR001680 GO:0005515
Gma12g01391 891 Pfam WD domain, G-beta repeat 409 439 IPR001680 GO:0005515
Gma12g01391 891 Pfam WD domain, G-beta repeat 513 548 IPR001680 GO:0005515
Gma12g01391 891 Pfam WD domain, G-beta repeat 689 726 IPR001680 GO:0005515
Gma12g01391 891 SMART WD40_4 511 549 IPR001680 GO:0005515
Gma12g01391 891 SMART WD40_4 645 684 IPR001680 GO:0005515
Gma12g01391 891 SMART WD40_4 685 726 IPR001680 GO:0005515
Gma12g01391 891 SMART WD40_4 594 632 IPR001680 GO:0005515
Gma12g01391 891 SMART WD40_4 401 440 IPR001680 GO:0005515
Gma12g01391 891 SMART WD40_4 552 591 IPR001680 GO:0005515
Gma12g01391 891 ProSiteProfiles Trp-Asp (WD) repeats profile. 518 558 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01391 Gma-Chr12 22054677 22061263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01391 515 726 Miscellaneous Gene Families AT5G08390 22.523 3.05e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01391 K20241 - gmx:100820217 1589.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01391 12 22054677 22061263 Gma12g01391 12 22054677 22061263 ECH