Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01222 ATGCGCGCCCCCACTGTAAGAAACCTATGCACCCTCAGCAACCTCTTACTCTCGGAGGTGTTAACCTGCAAACGCAACACCATCGTTGTCCCCTCCACAAAACCTTCTCCTGAATCAGAACTCGACCTTGCTCGTGACACTTCGCAAGAGGAGTTCTGTTGCGTTAATGGGTTTTGGTTTTTGGTGCTAAATGAGCTAGAACAATGTTGGGGTTTGTGCTGGCAAATGCGCTGGCTTCGTTGTTTTGTTTCCTTAGTGGCTACTTTGGTGTCTTGTTGGGGTATTTGGGCGTCTAAAGAAGACAAGAGGTCTGCTTCAGAGGAAATTGATGATGATGACGAGAAAAGGCAAAGAGCTGTAGATATACCGTGGATACCGGGCCTGTCTCATGGTAAATTGTGGGTGAAACGGAAGGAGGTAGCGCGTGAGAGGAAACAAAAGTGGATTTTTAAATGCACGAGTGATGACCGTTTTGACAGGTTAATTAAAATGTGTGCAGATAAACTAGGAGCGGGAAAGACCGTTTATGTGTTTGGTCACTTGGGTCGAGAAACGGGTGTGAAAGAGTACAATGCATTGATAAAAATGTGCATAAAGAAGGCAAGGGCAACTGACGATGAATTCATTGGTGTAAGAGAAATGAGTAAGGCTTTTCACCTTTTCAAATCAATGAGGGATCTTGGGTATCCACTAGAAGAGAAAACATATGCTGAGAACCCTAGTTCAGCTTCACAATTGGGTTACTACGAAATGTTGCTGTGGTTAAGAGTTGGCGATGAAGAAATGATCCAGGATATTTGTGAATATATTACAGTCGAAACTAGTGAAGACACATCTGCTTTACGAGAAAGTTACTTGATGGCTCTTTGGGAAAGTGATAGGAAAATGCAGATTTTGGATGTGGTGAAGAATATAGACATCACAGAGCTTTCATCTGAAAAATCTATTGCTGATATATTCCAATCATTAGGCAGGTTCCAGCTGGAATCTGTTGCGGACGATTTACTTTTGGATTTGAGAGCACGTGAAGATATCATCCTAAAAGTCAAGAATTTGCATGAATTATTGGAAGTGTTGCCTTCAACCTCATCATATGAAAAACTCATTTTGCATTGCTGTGGATTAGAGAAGGTGGGCGTAGCTCTTGATATTGTTGAAAAAATGTGTGAAGCTGGATTTACCTTGTCAACTGAGGTGTTACAGTACATATTACAAATCTGTGAGGAATCTTATGAATATGTTCTGGTATACTACATCTTCCTTAGTCCTTACTACAGCTCCCCCTTGAATGGTGAAATATGCAGGTGTTTGGTACACTTTTTCGTGAGGATGAAAGACTTTGAAGGTGCATTCAGGATGATTGCTGACTTAGAGGATATGAATTTCAAGCCTACAACAAACGTGTACAATGCTATAATGGCAGGATATTTTCGAGAGAAGAACATCAGTGGAGTGTTGAGGGTCCTTAAGAAAATGCGAGGTGCCAATGTAAAACCTGATTCTCAGACTTTCTCCTATTTGATTCGGAATTGTGAAAAGGAAGAGGATATAATGAAGGTAGCTTAA 1566 0.4125 MRAPTVRNLCTLSNLLLSEVLTCKRNTIVVPSTKPSPESELDLARDTSQEEFCCVNGFWFLVLNELEQCWGLCWQMRWLRCFVSLVATLVSCWGIWASKEDKRSASEEIDDDDEKRQRAVDIPWIPGLSHGKLWVKRKEVARERKQKWIFKCTSDDRFDRLIKMCADKLGAGKTVYVFGHLGRETGVKEYNALIKMCIKKARATDDEFIGVREMSKAFHLFKSMRDLGYPLEEKTYAENPSSASQLGYYEMLLWLRVGDEEMIQDICEYITVETSEDTSALRESYLMALWESDRKMQILDVVKNIDITELSSEKSIADIFQSLGRFQLESVADDLLLDLRAREDIILKVKNLHELLEVLPSTSSYEKLILHCCGLEKVGVALDIVEKMCEAGFTLSTEVLQYILQICEESYEYVLVYYIFLSPYYSSPLNGEICRCLVHFFVRMKDFEGAFRMIADLEDMNFKPTTNVYNAIMAGYFREKNISGVLRVLKKMRGANVKPDSQTFSYLIRNCEKEEDIMKVA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01222 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Gma12g01222 521 Pfam PPR repeat family 464 511 IPR002885 -
Gma12g01222 521 PANTHER OS02G0132600 PROTEIN 77 520 - -
Gma12g01222 521 Gene3D Tetratricopeptide repeat domain 154 425 IPR011990 GO:0005515
Gma12g01222 521 Gene3D Tetratricopeptide repeat domain 426 520 IPR011990 GO:0005515
Gma12g01222 521 PANTHER OS02G0132600 PROTEIN 77 520 - -
Gma12g01222 521 TIGRFAM PPR: pentatricopeptide repeat domain 468 501 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01222 Gma-Chr12 16005000 16015053 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01222 - - gmx:106794216 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01222 12 16005000 16015053 Gma12g01222 12 16005000 16015053 ECH