Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01220 ATGCCTCCCGTCGCTCCTCGATCCGGTGATGCCATATTCGCCAACGTCGAACGCGTCAATGCGGAGCTGTTTACTTTGACGTATGGCGCAATTGTGCGTCAATTGCTCACGGATCTGGAAGAGGCTGAGGAGGTTAACAAGCAGCTTGATCAAATGGGTTACAATATTGGAATCCGTTTGATTGATGAGTTTTTAGCCAAGTCTAATGTCTCCAGATGCAACGATTTCAGAGAGACGACTGATGTTATTGCAAAGGTTGGTTTTAAAATGTTCCTCGGTGTTACTGCATCTGTGACCAATTGGGATGCTGATGGAACATGTTGTAGTATTGTTTTGGAGGATAATCCTTTGGTAGATTTTGTTGAGCTTCCTGACAACTGCCAAGGTTTGTACTATTGCAACATCTTAAGTGGAGTCATCAGAGGAGCCTTAGATATGGTGTCAATGAAAACTGAGGTAACTTGGCTTCGTGATGTGCTTCGCGGTGATGATGTGTTTGAGTTGCAGCTGTTGTCGGCGCTGCAACGAGAGCAGCTGGACCTCGAACCTGACGTGATCAAGAGGCTGTCGATTGTTCTGCACCAGGTGTCGTCGAGGTAG 600 0.4667 MPPVAPRSGDAIFANVERVNAELFTLTYGAIVRQLLTDLEEAEEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCNDFRETTDVIAKVGFKMFLGVTASVTNWDADGTCCSIVLEDNPLVDFVELPDNCQGLYYCNILSGVIRGALDMVSMKTEVTWLRDVLRGDDVFELQLLSALQREQLDLEPDVIKRLSIVLHQVSSR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01220 199 CDD TRAPPC3_bet3 20 170 IPR016721 GO:0030008|GO:0048193
Gma12g01220 199 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 1 170 IPR016721 GO:0030008|GO:0048193
Gma12g01220 199 PIRSF TRAPP_1_Bet3 4 183 IPR016721 GO:0030008|GO:0048193
Gma12g01220 199 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 18 168 IPR024096 -
Gma12g01220 199 PANTHER PROTEIN PARTICLE COMPLEX SUBUNIT, PUTATIVE-RELATED 1 170 - -
Gma12g01220 199 Gene3D Trafficking protein particle complex subunit 3 4 180 - -
Gma12g01220 199 Coils Coil 32 52 - -
Gma12g01220 199 Pfam Transport protein particle (TRAPP) component 24 169 IPR007194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01220 Gma-Chr12 15943974 15953849 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01220 K20302 - gmx:100306217 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01220 12 15943974 15953849 Gma06g02479 06 47274408 47278696 GST