Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01217 atgtggagagATCCTGGGGCTCCCGCTGATTCTTTTTATGAAACTCGTCCTGAGTGCACCGATGTTCCCAAGTCTCGATTTAGGATCAAGGCTGGCAAAACATTAAGTGCAAGAAAATGGCATGCTGCATTTTCTCCAGAAGGGTATTTAGATATAGGCAAGACTCTTAGTCGAATCCATCGTGGGGGAATCCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTCAAGAAAGAGATGAGATAAGACAACGTCGTAGGGAGCAATATGCTAATTGGAAGGAAGAATGTCGTAAGTTGTTTCCTCTCATAGGAAGTGGTAGATTTATCACAGCACCTGTAATTACTGAAGATGGTAGACAGGTTCAAGATCCCTTGGTTTTGTTAGAAAATAATCCAAATAATGGATTGGTTATACCCACGGAGGTTACCACTAATGATACAAATAACTTAAAAAAGGTGACAGACAAAGGAGTAATTCAATGGATGTTAACGCTCCATCAAATAGGTCTTGATGTAATACGCACTGATAGAACATTGATTTTTTATGAAAAGAAAGAGAACTTATCAAAACTTTGGGATATTCTCAGTGTTTATGCTCGAATAGATTCAGATGTTGGCTATGGTCAAGGAATGAGTGACCTATGCTCTCCTATGATAATACTTCTTAATGATGAGGCTGATGCATTTTGGTGCTTTGAGCGTTTGATGCGTCGATTGCGAGGAAATTTTAGATGCACTGATAACTCTGTTGGTGTTGAGGCTCAATTAAGTACTTTGGCTACTATCACTCAAGTAATTGATCCAAAACTTCATCAACATATAGAACATATTGGTGGAGGTGACTATCTATTTGCTTTTCGGATGATAATGGTTCTATTTCGACGAGAATTCTCTTTTTGCGATTCGTTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCCGATTTGTTTTGGATGTACGAGGATGATGATGACAAATCTGAGGAATCTAAAGGAAGATTAAAGTCATTGCGCCACTATGGAAAGTATGAAAGAGAAAATATGAAAAATGGAGCAAAGAATGGTGAAGATCCCCCCCTTCCCATATCTGTTTTCCTTGTTGCTAGTGTACTAAAAGACAAAAGCACAATGTTACTCCAGCAAGCAAAAGGCTTGGATGATGTTGTCAAGGTTTGGTTTATTCATGTGACTTTTTAG 1236 0.3835 MWRDPGAPADSFYETRPECTDVPKSRFRIKAGKTLSARKWHAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYDPKSTFQERDEIRQRRREQYANWKEECRKLFPLIGSGRFITAPVITEDGRQVQDPLVLLENNPNNGLVIPTEVTTNDTNNLKKVTDKGVIQWMLTLHQIGLDVIRTDRTLIFYEKKENLSKLWDILSVYARIDSDVGYGQGMSDLCSPMIILLNDEADAFWCFERLMRRLRGNFRCTDNSVGVEAQLSTLATITQVIDPKLHQHIEHIGGGDYLFAFRMIMVLFRREFSFCDSLYLWEMMWALEYDPDLFWMYEDDDDKSEESKGRLKSLRHYGKYERENMKNGAKNGEDPPLPISVFLVASVLKDKSTMLLQQAKGLDDVVKVWFIHVTF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01217 411 Gene3D - 260 405 - -
Gma12g01217 411 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 400 - -
Gma12g01217 411 SMART tbc_4 60 347 IPR000195 -
Gma12g01217 411 ProSiteProfiles TBC/rab GAP domain profile. 63 324 IPR000195 -
Gma12g01217 411 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 400 - -
Gma12g01217 411 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 262 403 IPR035969 -
Gma12g01217 411 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 284 IPR035969 -
Gma12g01217 411 Pfam Rab-GTPase-TBC domain 159 322 IPR000195 -
Gma12g01217 411 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 154 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01217 Gma-Chr12 15876868 15884605 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01217 - - gmx:100782079 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01217 12 15876868 15884605 Gma12g01217 12 15876868 15884605 ECH