Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01033 ATGCAGATTTCTGTGCATAGGCAACCCTTCTCTGAGGTTTTGTTTGGCAGCCACCTGTTGGGCGTTGTTTCAAGTATAATGTTGATGCCTGTTATTAATGGTGGTGAAAAGGCTAGCTATGGTGGGGTGCTTCGTGATGCTAATGGCCATTGGATAAATGGGTTCACGAGACAATTGGGTCGTTGTTCCATTATGGCGTTCCTGGAATGTGAAGATTACCTACATGTGTTGTGTGAGGCTAATAGTGTGGCTGACAACCTAGCTTCCAAATTTCATCACTCTTTGCAAGGGTTGGTGTTTTATGATAACTCTCTTGCAAAGTGCAAGATCCTTCTATGcttcttcgattcagagtcgaattggaaaatgggccggatatgggccacagcggaggatttgggccgcaacagggcccgcgtgctgtctctgtaccggcaaatactgcggggtctgaactcgccggagttgcggctgggcttcgcggcgaggctggcgaagaaggcggaggcgcgtgcaatgttctgggtgggctccgatgaacgctcgttgcacaatattgcggatctcattgatgctgcagagtactctctctcctttctcagaaaagTTAAACGACATTTTGATAGCTTTCGAACACTTTGGCAATCTCTATCTACAATTCAGTCCACTTTTTGTGATTCAGATATTTCAGCATATGTTATAGACAACAAGAACCTTCTAAGGCCGAGTCTGAACTCCAAAATTGGTCTTCACGTTCTGGACCTCATTGACTGTGGTTCGTTTGAACTAGACCTAACCCTGTACAACACATTGTTAAAGAGGTGCACCCAGTTGGGGAAGCTCAAAGAAGGAAAACTAGTGCACTTCCACATGTTCAATTCCAAATTCAAAGATGACCTTGTTATTCAGAACTTTGTTCTATTCATGTACGCTAGGTGTGGAAATTTGAAAGACACACAACACGTGTTCAACGAAAAGCTGCAAAAGGACATGGTTACTTGGACCTCCATGATTAGTGGCTATGCTCAGAATGAAAGGGCCAAGGACACGCTCGTGTTGTTTCCTCGAATACTTAGTGAGGGCACAAAGCTGAACTAG 1098 0.3188 MQISVHRQPFSEVLFGSHLLGVVSSIMLMPVINGGEKASYGGVLRDANGHWINGFTRQLGRCSIMAFLECEDYLHVLCEANSVADNLASKFHHSLQGLVFYDNSLAKCKILLCFFDSESNWKMGRIWATAEDLGRNRARVLSLYRQILRGLNSPELRLGFAARLAKKAEARAMFWVGSDERSLHNIADLIDAAEYSLSFLRKVKRHFDSFRTLWQSLSTIQSTFCDSDISAYVIDNKNLLRPSLNSKIGLHVLDLIDCGSFELDLTLYNTLLKRCTQLGKLKEGKLVHFHMFNSKFKDDLVIQNFVLFMYARCGNLKDTQHVFNEKLQKDMVTWTSMISGYAQNERAKDTLVLFPRILSEGTKLN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01033 365 PANTHER COMPLEX 1 LYR-LIKE PROTEIN 118 202 - -
Gma12g01033 365 Pfam PPR repeat 267 292 IPR002885 -
Gma12g01033 365 Pfam PPR repeat 332 361 IPR002885 -
Gma12g01033 365 Gene3D Tetratricopeptide repeat domain 246 365 IPR011990 GO:0005515
Gma12g01033 365 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01033 Gma-Chr12 11676384 11685181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01033 268 365 Glycoside Hydrolase AT3G49170 27.551 2.41e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01033 - - gmx:100778327 332.798