Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01011 ATGTTGCATAAGGTGTGCAAGAGGTACAGAATCATGGTGAGTGGAAATGGTTTGTTTTACCCCGTTGTGGGGTTTGCATCGATCGTGTTGTTCATTTACATGTCTTTTGGGGATGTGAGGTTTGGTTTTGAGGAAGAAGCTGAATTGGCTTTTGTGGAGAGAAATGGGACTCAGTTTATGGTGGATGGAAAAGCTTTCTACATTAATGGGTGGAACTCTTATTGGTTAATGGTTCAATCTGTGGATGAGTATTCCAGGCCAAAGGTACGTGAAATGCTAAGGGCTGGGGCAAAGATGGGGCTAACTGTGTGTAGAACTTGGGCCTTCAATGATGGTGACTACAATGCCCTTCAGAGTTCCCCTGGTGTGTTCAATGAACAAGCTTTCAAGGCCTTGGACTATGTTATAGCAGAAGCAAGGCAACATGGAATTAGGCTGCTCCTTAGCTTAGTAAATAACTTGCATGCATATGGTGGGAAGACTCAATATGTCAAGTGGGCATGGCAAGAAGGGGTTGGATTAAGCTCGTCTAACGATTCTTTCTTCTTTGATCCATCAATCCGTAGTTATTTCAAGAATTACGTCAAGACAATTCTGACAAGGAAGAATACTATAACTGGAATTGAATATAGAAATGACCCCACCATTTTTGGTTGGGAATTGATTAATGAACCTCGGTGCCTAACTGATCCTTCTGGTGATACTCTCCAAGATTGGATAGAGGAAATGTCAGCTTTTGTCAAATTGATTGACAAGCGCCATCTTGTGACTGTTGGACTTGAAGGTTTCTATGGTCCTAATGATCCGAAAAGATTGACTGTGAACCCTGAGGATTGGGCATCTAGACTTGGATCTGACTTTATAAGGAACTCCAAAATCTCAAATATTGACTTCACCTCTGTCCATATCTATCCTGATCACTGGTTTCATCATCAGGTATTTGAAGACTACATGAAATTTGTCTCCAAGTGGATGCTTTCTCACATCGAAGATGGTGATAAGGTATTGAACAAGCCAGTCTTGTTCTCTGAATATGGGTTGTCAGACATAAATTTTACTATGCCTGAACGAAAAACAATGTACAAAACAATTTTAGATATAAGCTACAAATCTGCAAAGAAAAACAGGTCTGGAGCCGGTGCTCTAGTTTGGCAATTCTTAGTTGGAGGAATGCAGGAGTTTACTGATGATTTTGGGATCATCCCATGGGAAAAGACACCAATTCCTTCACTATTTGTTGAACAATCATGCAGATTGGCCAAGACCAAGGGATGGCCTCACAAGGACACAAGTTTTAAACAATTTTGTTAG 1311 0.4088 MLHKVCKRYRIMVSGNGLFYPVVGFASIVLFIYMSFGDVRFGFEEEAELAFVERNGTQFMVDGKAFYINGWNSYWLMVQSVDEYSRPKVREMLRAGAKMGLTVCRTWAFNDGDYNALQSSPGVFNEQAFKALDYVIAEARQHGIRLLLSLVNNLHAYGGKTQYVKWAWQEGVGLSSSNDSFFFDPSIRSYFKNYVKTILTRKNTITGIEYRNDPTIFGWELINEPRCLTDPSGDTLQDWIEEMSAFVKLIDKRHLVTVGLEGFYGPNDPKRLTVNPEDWASRLGSDFIRNSKISNIDFTSVHIYPDHWFHHQVFEDYMKFVSKWMLSHIEDGDKVLNKPVLFSEYGLSDINFTMPERKTMYKTILDISYKSAKKNRSGAGALVWQFLVGGMQEFTDDFGIIPWEKTPIPSLFVEQSCRLAKTKGWPHKDTSFKQFC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01011 436 Pfam Cellulase (glycosyl hydrolase family 5) 84 385 IPR001547 GO:0004553|GO:0071704
Gma12g01011 436 SUPERFAMILY (Trans)glycosidases 51 414 IPR017853 -
Gma12g01011 436 PANTHER - 15 436 IPR045053 GO:0004553
Gma12g01011 436 Gene3D Glycosidases 48 423 - -
Gma12g01011 436 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 15 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01011 Gma-Chr12 11276606 11280577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01011 14 436 Glycoside Hydrolase AT2G20680 69.647 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01011 K19355 - gmx:100811461 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01011 12 11276606 11280577 Gma12g01011 12 11276606 11280577 ECH
Gma12g01011 12 11276606 11280577 Gma06g02624 06 49589030 49593657 GST