Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00881 ATGACCAACGCTCACAAGATGCGCGTGGCATTCACCGTCGTCACATTCACCGCCGCAGCCGCCGCTGAGTTTAGGGGTTTTCTTACAGAGAATGCTTTGAATTCGCATCCATATGAGGCAGAGATTACGGCATTGTTGAAAAATCCTCTGCCTAAAATTGAGCTTGGAACTGAGATCGCAGACTTGGAAATGAAGGATTCCTATGTTTGGGTTCATACCGAGTTAAATGAACTAATTGATGTTTTGAGCGAAGAGAGGTTCTTTGCTGTGGACACGGAACAACATAGCTTACGATCTTTTTTAGGCTTTACAACATTGGTTCAGATTTCTACACGGGAGAAAGATTATTTGGTTGATACAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCAGTTTTTGCCAATCCTTCAATTTGTAAAGTGTTCCATGGGGCTGACAATGATATAGTCTGGCTACAGAGGGACTTCCATATATACGTTGCATGTGAGGTGATGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGGCAGCGCCCTCTCTCAGCAGAAATGGTACATTATGCACAAACAGATGCACACTATCTATTGTATATTGCAAACTGTCTGATCAATGAACTCAAACAACTGGACAATGAAAACTCTTCTTCCGATGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAACGTGATTTTAAGCAGTCATGGCTTTCCATCAATTTCAAATGAATCCCAGGTTTGCTGCTTCTTAATGCAGATTCAGAATATTTTGAGGCAACTGTGCTCGTGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTGTCAGATCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGTGAGTCACTCTGAAATATACAGCACCATAGCTCAGGCTGATATCAATATGGAAATGGGTGTCAACTCTCTCATCCCTTCCCTGTCTCCTGTAATTTGCAGTCACCTTAGTGATATCTATCATCTGCTTGCAAACAAGTTGGATAACGATGATGATATTTATTCAGTGATTCTACAGAAGTGCCTAGGTCAAAATGGGAGCTGCCCACTTTCTATATTTAATTATGCTTTGTTGGTAAACAGTAACCTAAGACCTACTTTAGCCTATAAACAACCAGGCCCAAAAAATCCTAAACAATATTCTAGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAATTCTCTTGTAAATCTGCTGTTTATCACAATTGCCGGATATATGCTAATGATGGGAGGCTGCTTTGTTATTGTGATCGGAGGAAGCTTGAATGGTACCTTAATCGGGATCTTGCAAAGCTTATTGATGAGGAACCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGTCGCCCGGAGGATGAAGGCAATGATTTTTATATCCAGAGTAAGAAAAATATAACACATTTCCCTGAGCATCTGAAAAGCCATCGTTCTCATGACATTGTCCTACTTTGTGTGGATTTCCATGAAGTTGCACATGCTGCTGCAGAAAAGTATAAGAGAAAAGTAGCTGTTGAATTTGGGATTCCTCTCTACCTTCAGAGGGTAGTTCATCCAGCTGTATATCCTTTACAATTACAAACAGCTGCTATGGCTCTTCTACGCCATGGGCCAAGAATGCCTCTCAATCGCCATGAAGAACTGACTGAGATTATAAATAGATATTATGGAGGAAGGGAGATATCCGATGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACTCCTCATGAGAGAAGACGATTCAAGAAGAAGAGAGGGTTTTCTTTTAAACATTCTATAGGGAGTACTGCTACAGTGCCAAAACAGGATAATCATGCTGGTTGCACAACCAGAATGAATGATTTGGACGTGGACACATTGAAAGTTGATGCTCATGATGGCTCATATGGAAATGAAGAAACAAGTGAAGTAGATAGAGAACTTTTTATGAGAAAAGACGATTTTGAAAACTCCACTTTAGCTTCTGATATTAAAGTTAATGGAGTTGTCTCTGCAACTCCGAACAGAAATATGATCACAGTTGAAACTACATACTACAATGGAAGCAGTGACTCTGCTGTGAATGTTGATGATAGCTGTCTAAACAGTAGGCAAGAAAATGGACTTGGTGAACATAATTCAAAACTATCACTCTTGGGACATGGACCACATGGGAAACAAGTTGTAGAAGATTTACTGAAGGAGTATGGTGaagatggcatccaagcgttttgtcaaagatggcatccgagcgtttcatcaaagaAAGAAGACACCAAGTCAACACACTCTTGA 2373 0.3949 MTNAHKMRVAFTVVTFTAAAAAEFRGFLTENALNSHPYEAEITALLKNPLPKIELGTEIADLEMKDSYVWVHTELNELIDVLSEERFFAVDTEQHSLRSFLGFTTLVQISTREKDYLVDTIALHDFMGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVACEVMSKPQKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYAQTDAHYLLYIANCLINELKQLDNENSSSDDKFHFVLEASRRSNVILSSHGFPSISNESQVCCFLMQIQNILRQLCSWRDLMARIHDESLKYVLSDQAIVALASQPSVSHSEIYSTIAQADINMEMGVNSLIPSLSPVICSHLSDIYHLLANKLDNDDDIYSVILQKCLGQNGSCPLSIFNYALLVNSNLRPTLAYKQPGPKNPKQYSRKASRDLFVQKFSCKSAVYHNCRIYANDGRLLCYCDRRKLEWYLNRDLAKLIDEEPPAIMLLFEPKGRPEDEGNDFYIQSKKNITHFPEHLKSHRSHDIVLLCVDFHEVAHAAAEKYKRKVAVEFGIPLYLQRVVHPAVYPLQLQTAAMALLRHGPRMPLNRHEELTEIINRYYGGREISDEDLERALQVGMTPHERRRFKKKRGFSFKHSIGSTATVPKQDNHAGCTTRMNDLDVDTLKVDAHDGSYGNEETSEVDRELFMRKDDFENSTLASDIKVNGVVSATPNRNMITVETTYYNGSSDSAVNVDDSCLNSRQENGLGEHNSKLSLLGHGPHGKQVVEDLLKEYGEDGIQAFCQRWHPSVSSKKEDTKSTHS 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00881 790 Gene3D - 15 254 IPR036397 GO:0003676
Gma12g00881 790 PANTHER PROTEIN RRP6-LIKE 3 31 775 - -
Gma12g00881 790 Coils Coil 218 238 - -
Gma12g00881 790 Pfam HRDC domain 276 313 IPR002121 GO:0003676
Gma12g00881 790 SUPERFAMILY Ribonuclease H-like 33 229 IPR012337 -
Gma12g00881 790 Pfam 3'-5' exonuclease 73 225 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gma12g00881 790 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 31 775 IPR045092 GO:0000175|GO:0000467
Gma12g00881 790 SUPERFAMILY HRDC-like 276 357 IPR010997 GO:0000166|GO:0044237
Gma12g00881 790 ProSiteProfiles HRDC domain profile. 271 351 IPR002121 GO:0003676
Gma12g00881 790 SMART 35exoneu6 66 226 IPR002562 GO:0003676|GO:0006139|GO:0008408
Gma12g00881 790 Gene3D HRDC domain 266 366 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00881 Gma-Chr12 8654655 8665247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00881 K12951 - gmx:100791485 1331.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00881 12 8654655 8665247 Gma12g00881 12 8654655 8665247 ECH
Gma12g00881 12 8654655 8665247 Gma06g02719 06 50923787 50931988 GST