Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00877 ATGTCCCTCACTTCTCCTCCACAGtctgtgcttgaggcagctgcagtgttgacagccatcattgttgtacatgagagtggccacttccttgctgcttctctccaaggaatccatgtgagtaagtTTGCTGTAGGGTTTGGTCCAATTTTAGCAAAGTTTAATGCCAAAAATGTTGAATATTCCATCAGGGCTTTTCCCCTTGGTGGCTTTGTGGGGTTCCCTGATAATGATCCAGAGAGTGATATTCCTGTTGATGATGAAAACCTGCTTAAGAATAGACCAATATTGGATAGGGTGATTGTGGTTTCAGCTGGTGTTGTTGCTAACATAATTTTTGCATTTGCTATTATCTTTGCACAAGTCCTGTCTGTTGGTTTGCCTGAGCAAGAGGTCTTTCCTGGGGTGGTTGTGCCTGATGTTAGAGCCTTTTCTGCTGCTTCAAGAGATGGGTTGGTTCCTGGGGATGTGATCCTTGAGGTCAATGGAAGTGAGTTTTCAAAACCAGGTCCAAGTGCGGTTTCTGAAGTTGTTGATGTTATCAAGAGGAACCCCAAGAGATATGTTTTGCTCAAGATTAAAAGGGGGGAGCAGAATTTTGATATAAGGGTCACCCCAGATGAGAATTTTGATGGAACTGGGAAAATTGGAGTTCAGCTAGCCCCTAATGTGAAGATAGCTAAGGTTAGGCCAAAAAATTTGGTGCAGGCTGTGGAGTTTACTGGGCAAGAGTTTTGGGGTCTGGCCTCTAATGTTTTAGATGGGTTAAAGCAGACTTTTTTGAACTTCTCCCAGTCAGCTAGTAAGGTTTCAGGTCCTGTAGCCATTATTGCTGTTGGTGCTGAAGTGGCACGGTCGAATATCGATGGTCTCTTCCAGTTTGCTGCGATACTCAACATTAACCTTGCGGTTATAAACCTTCTGCCTTTGCCTGCTTTAGATGGTGGCACATTGGCATTGATCCTAATTGAGGCTGCCAGGGGTGGGAGAAAGCTACCTTTGGAAGTGGAGCAAACGATCATGTCTTCTGGAATTATGCTTGTTATAATTCTGGGGTTATTCCTTATTGTTCGTGATACCCTAAACCTTGATTTTATCAAAGACTTGTTGGATCAATGTGACCGGGAAAATCCCACACCACTGGCATGGGATGAAGCAAGGGTCTTGGAGCCAATAGGTGATTGGCTTGGAGCAGGAGATTCATCAAGAGATCTGTCAGGATTAAACACTGCGTGTAATTCATTATCTTGCCCCTCACATTCGACCCCACAACCGCTGTTCCATATTCTGCCTTCAAATCGCCATTTCTTCCTTTCTCACCAACCAATTacaaagGCTAGAGATATGGGGAGCAAGGGACCAAGTTGGTCTGACCAATGGGGAAGTGGAGGGTTTGGCAGTGATCACTATGAGGAGGAGGAGAAGATGAAGATGAAGAAGAGTGGGAGCAGCAAGAAGATGGCAGATGCAAAGGCTGTGGCATCAGCTGGAATGGACAAGGCCAAAACTGCAGCAGTTGTGGGTGCCCAGAAGGTGAAGAGTGGAACCTCTGCTGGCCTCAAATGGGTCAAGAATCAGTATCAGAAAAGGACTTCCAAGTGA 1599 0.4228 MSLTSPPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRVIVVSAGVVANIIFAFAIIFAQVLSVGLPEQEVFPGVVVPDVRAFSAASRDGLVPGDVILEVNGSEFSKPGPSAVSEVVDVIKRNPKRYVLLKIKRGEQNFDIRVTPDENFDGTGKIGVQLAPNVKIAKVRPKNLVQAVEFTGQEFWGLASNVLDGLKQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLFQFAAILNINLAVINLLPLPALDGGTLALILIEAARGGRKLPLEVEQTIMSSGIMLVIILGLFLIVRDTLNLDFIKDLLDQCDRENPTPLAWDEARVLEPIGDWLGAGDSSRDLSGLNTACNSLSCPSHSTPQPLFHILPSNRHFFLSHQPITKARDMGSKGPSWSDQWGSGGFGSDHYEEEEKMKMKKSGSSKKMADAKAVASAGMDKAKTAAVVGAQKVKSGTSAGLKWVKNQYQKRTSK 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00877 532 Pfam PDZ domain 136 194 IPR041489 -
Gma12g00877 532 Gene3D - 126 220 IPR036034 GO:0005515
Gma12g00877 532 PANTHER MEMBRANE METALLOPROTEASE ARASP2, CHLOROPLASTIC-RELATED 8 369 - -
Gma12g00877 532 CDD PDZ_metalloprotease 122 205 - -
Gma12g00877 532 Pfam Peptidase family M50 14 350 IPR008915 GO:0004222|GO:0006508
Gma12g00877 532 SUPERFAMILY PDZ domain-like 129 207 IPR036034 GO:0005515
Gma12g00877 532 SMART pdz_new 122 196 IPR001478 GO:0005515
Gma12g00877 532 CDD S2P-M50_PDZ_RseP-like 10 361 - -
Gma12g00877 532 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 8 369 IPR004387 GO:0004222|GO:0006508|GO:0016021
Gma12g00877 532 ProSiteProfiles PDZ domain profile. 134 195 IPR001478 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00877 Gma-Chr12 8598143 8605816 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00877 - - gmx:100800101 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00877 12 8598143 8605816 Gma12g00877 12 8598143 8605816 ECH