Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00827 ATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGAGTGCACAGCAAGACTTTTCTCCAAGCATGGAGCCAAAGTGGTGATTGCTGATATCCAAGACGAGTTAGGCCACTCAATTTGCAAAGACTTGGATTCATCTTCAGCTACTTACATTCATTGTGATGTCACAAAAGAAGAAAACATCGAACACGCCGTGAACACGACCGTTTCCAAGTACGGTAAACTAGACATCATGCACAGCAGCGCAGGTATAGTTGGCGCATGGAACCCCAGCATATTGCACAACAAGAAGTCTCACTTTGAGCAAGTTATCAGTGTCAACCTGGTGGGCACATTCCTGGGAATCAAGCACGCCGCGAGGGTGATGATCCCTTCTGGGCGTGGCAGCATAGTTGCAATGGCTAGCATTTGTGGAAGAATTGGTGGCGTGGCTTCGCATGCCTATACGAGCTCGAAGCACGGCATCGTGGGACTGGTGCGAAACACTGCCGTGGAGCTTGGAACCTTAGGGATCAGAGTGAATAGTGTGTCTCCTTATGCGGTCCCTACGCCCATGAGTAAAACTTTCCTCAACACTGATGATGAGGGGATTGCTGCACTGTATTCCAATCTTAAAGGGACTGTTCTTAAGCCCCAGGATGTGGCTGAAGCTGTTCTTTACTTGGGAAGTGACGAGTCCAAGTATGTTAGTGGCCATGACCTTGTTGTAGATGGGGGTTTCACTGTCGTAAACCCTGGTTTGTGTGTGTTTGGGCAATCCGTGTAG 822 0.4951 MGSVPLASAAALARRLEGKVALITGGASGIGECTARLFSKHGAKVVIADIQDELGHSICKDLDSSSATYIHCDVTKEENIEHAVNTTVSKYGKLDIMHSSAGIVGAWNPSILHNKKSHFEQVISVNLVGTFLGIKHAARVMIPSGRGSIVAMASICGRIGGVASHAYTSSKHGIVGLVRNTAVELGTLGIRVNSVSPYAVPTPMSKTFLNTDDEGIAALYSNLKGTVLKPQDVAEAVLYLGSDESKYVSGHDLVVDGGFTVVNPGLCVFGQSV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00827 273 Pfam Enoyl-(Acyl carrier protein) reductase 25 260 - -
Gma12g00827 273 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 262 IPR036291 -
Gma12g00827 273 Gene3D - 7 269 - -
Gma12g00827 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Gma12g00827 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Gma12g00827 273 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Gma12g00827 273 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 10 265 - -
Gma12g00827 273 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Gma12g00827 273 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Gma12g00827 273 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Gma12g00827 273 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Gma12g00827 273 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Gma12g00827 273 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Gma12g00827 273 PANTHER MOMILACTONE A SYNTHASE 10 265 - -
Gma12g00827 273 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00827 Gma-Chr12 7730227 7731641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00827 14 261 Acyl Lipid Metabolism Gene Families AT1G24360 26.984 3.50e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00827 - - gmx:100810754 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00827 12 7730227 7731641 Gma12g00827 12 7730227 7731641 ECH